miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 5' -59.1 NC_003521.1 + 167787 0.66 0.85531
Target:  5'- uCGUCGaAGUUGa--GGCCCAggUCGGCg -3'
miRNA:   3'- -GCGGCgUCGACagaCCGGGUa-AGCCG- -5'
13971 5' -59.1 NC_003521.1 + 213140 0.67 0.850827
Target:  5'- gGCCGCAGCgaacugaagacgUUGGUCCAg--GGCa -3'
miRNA:   3'- gCGGCGUCGaca---------GACCGGGUaagCCG- -5'
13971 5' -59.1 NC_003521.1 + 203521 0.67 0.847802
Target:  5'- uGCCGCGGCUGg-UGGUugaaguggaugUCGUagGGCg -3'
miRNA:   3'- gCGGCGUCGACagACCG-----------GGUAagCCG- -5'
13971 5' -59.1 NC_003521.1 + 37008 0.67 0.847802
Target:  5'- gCGUCGCGGCggaGUCaGGaccgacaggaguCCUcgUCGGCg -3'
miRNA:   3'- -GCGGCGUCGa--CAGaCC------------GGGuaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 44152 0.67 0.847802
Target:  5'- aCGCCgucgucgaGCAGCaG-CUGGCgCcgUCGGUa -3'
miRNA:   3'- -GCGG--------CGUCGaCaGACCGgGuaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 7808 0.67 0.847041
Target:  5'- aGCgGCAGCUGgacGGCgucaaggCCAUcCGGCg -3'
miRNA:   3'- gCGgCGUCGACagaCCG-------GGUAaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 74293 0.67 0.843211
Target:  5'- cCGUCGCAGCUG-CgGGCCCuacugacgcucaucaAcUCGGa -3'
miRNA:   3'- -GCGGCGUCGACaGaCCGGG---------------UaAGCCg -5'
13971 5' -59.1 NC_003521.1 + 155267 0.67 0.840116
Target:  5'- gGCgGCGGCgccUCaGGCCCGUcgcUgGGCa -3'
miRNA:   3'- gCGgCGUCGac-AGaCCGGGUA---AgCCG- -5'
13971 5' -59.1 NC_003521.1 + 123898 0.67 0.840116
Target:  5'- uGUCGCGuGCUGUC-GGCgCg--CGGCg -3'
miRNA:   3'- gCGGCGU-CGACAGaCCGgGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 413 0.67 0.840116
Target:  5'- uGaCUGCAGCUGUgugCUGGCgaggCCAagcCGGCg -3'
miRNA:   3'- gC-GGCGUCGACA---GACCG----GGUaa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 130493 0.67 0.840116
Target:  5'- cCGCgagCGCGGCcgcGUCaugaUGGCCCug-CGGCu -3'
miRNA:   3'- -GCG---GCGUCGa--CAG----ACCGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 134531 0.67 0.840116
Target:  5'- cCGCCGCcuGGUUG-CUGuuGCCCuccaCGGCg -3'
miRNA:   3'- -GCGGCG--UCGACaGAC--CGGGuaa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 216411 0.67 0.840116
Target:  5'- gCGCCGUcuGGCUuUCUaugcuccgcgGGCCCGgcgcCGGCu -3'
miRNA:   3'- -GCGGCG--UCGAcAGA----------CCGGGUaa--GCCG- -5'
13971 5' -59.1 NC_003521.1 + 40735 0.67 0.840116
Target:  5'- uGaCUGCAGCUGUgugCUGGCgaggCCAagcCGGCg -3'
miRNA:   3'- gC-GGCGUCGACA---GACCG----GGUaa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 124457 0.67 0.840116
Target:  5'- gCGCgGCAGCaGcagCUcGGCCUcgUCGGg -3'
miRNA:   3'- -GCGgCGUCGaCa--GA-CCGGGuaAGCCg -5'
13971 5' -59.1 NC_003521.1 + 98539 0.67 0.840116
Target:  5'- cCGCUGCAGCggcggcggGUCccaGCCCGagcccgagUCGGCc -3'
miRNA:   3'- -GCGGCGUCGa-------CAGac-CGGGUa-------AGCCG- -5'
13971 5' -59.1 NC_003521.1 + 148040 0.67 0.840116
Target:  5'- gGCCGUcaGGCUGUC--GCCCAUguacgagaugUCGcGCg -3'
miRNA:   3'- gCGGCG--UCGACAGacCGGGUA----------AGC-CG- -5'
13971 5' -59.1 NC_003521.1 + 17498 0.67 0.839338
Target:  5'- gCGCCGCcggucacGGCgGUUcccGGCCCgg-CGGCg -3'
miRNA:   3'- -GCGGCG-------UCGaCAGa--CCGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 209977 0.67 0.832258
Target:  5'- uGCCGCGGac----GGCCCAgaCGGCc -3'
miRNA:   3'- gCGGCGUCgacagaCCGGGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 229067 0.67 0.832258
Target:  5'- aGCCGUccccagGGCgaGUCgGGCCCGUcgaugaCGGCc -3'
miRNA:   3'- gCGGCG------UCGa-CAGaCCGGGUAa-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.