Results 21 - 40 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 112374 | 0.66 | 0.869771 |
Target: 5'- gGCUGCGGC-GUCUcGUCCAccUGGCu -3' miRNA: 3'- gCGGCGUCGaCAGAcCGGGUaaGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 73000 | 0.66 | 0.869771 |
Target: 5'- gGCCGCucCUGcUCUGGCUgaCAUgcgCGGUg -3' miRNA: 3'- gCGGCGucGAC-AGACCGG--GUAa--GCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 74502 | 0.66 | 0.869771 |
Target: 5'- uCG-CGCAGCUG-CUGGagCAgagCGGCa -3' miRNA: 3'- -GCgGCGUCGACaGACCggGUaa-GCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 187916 | 0.66 | 0.869066 |
Target: 5'- uCGaucaGCAGCUcgcgagaGUcCUGGUCgCGUUCGGCg -3' miRNA: 3'- -GCgg--CGUCGA-------CA-GACCGG-GUAAGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 135616 | 0.66 | 0.867651 |
Target: 5'- aCGCCGCgcAGCUcgcGggcggaucccacgaUCggcggggGGCCCAgcgUCGGCg -3' miRNA: 3'- -GCGGCG--UCGA---C--------------AGa------CCGGGUa--AGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 122112 | 0.66 | 0.862635 |
Target: 5'- gGCUGCAGCggcGUCUcGCCg---CGGCu -3' miRNA: 3'- gCGGCGUCGa--CAGAcCGGguaaGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 187443 | 0.66 | 0.862635 |
Target: 5'- uCGCCGCGGcCUGcUCcuGCUCGgucugUCGGCc -3' miRNA: 3'- -GCGGCGUC-GAC-AGacCGGGUa----AGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 144102 | 0.66 | 0.862635 |
Target: 5'- uGCCucauGCGGCUG-CUGGaCCGccgCGGCc -3' miRNA: 3'- gCGG----CGUCGACaGACCgGGUaa-GCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 18717 | 0.66 | 0.862635 |
Target: 5'- gGCUGUGGCUGccgCUGGCggcggcgaUCGUggCGGCg -3' miRNA: 3'- gCGGCGUCGACa--GACCG--------GGUAa-GCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 92214 | 0.66 | 0.862635 |
Target: 5'- gGCCGCGcgacgagcGCUGUgagGGCCCGacgGGCg -3' miRNA: 3'- gCGGCGU--------CGACAga-CCGGGUaagCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 17017 | 0.66 | 0.862635 |
Target: 5'- gGCgGCGGCgcaggcccgucGUCUggcGGCCCA--CGGCg -3' miRNA: 3'- gCGgCGUCGa----------CAGA---CCGGGUaaGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 179270 | 0.66 | 0.862635 |
Target: 5'- uGCCGCAGCUGggUGGUCauuUUCuugaGCg -3' miRNA: 3'- gCGGCGUCGACagACCGGgu-AAGc---CG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 197716 | 0.66 | 0.862635 |
Target: 5'- uCGCCGCAGCgcuugGUCa-GCUCG-UCGcGCg -3' miRNA: 3'- -GCGGCGUCGa----CAGacCGGGUaAGC-CG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 115812 | 0.66 | 0.861911 |
Target: 5'- cCGCCGCucaGGCgcggGUggcucagcaggcgCUGGCUCAggcgggCGGCg -3' miRNA: 3'- -GCGGCG---UCGa---CA-------------GACCGGGUaa----GCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 20398 | 0.66 | 0.861911 |
Target: 5'- aCGCCGU-GCUcGUCuuucagcUGGCCUucaccUUCGGCc -3' miRNA: 3'- -GCGGCGuCGA-CAG-------ACCGGGu----AAGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 129914 | 0.66 | 0.85531 |
Target: 5'- gGCCGCGcgccuGCUGcgcgaacacCUGGCCgAgaCGGCg -3' miRNA: 3'- gCGGCGU-----CGACa--------GACCGGgUaaGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 136752 | 0.66 | 0.85531 |
Target: 5'- uGCCGCgcccgcucgAGCUG-CUGGCCUAccUGcGCg -3' miRNA: 3'- gCGGCG---------UCGACaGACCGGGUaaGC-CG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 167787 | 0.66 | 0.85531 |
Target: 5'- uCGUCGaAGUUGa--GGCCCAggUCGGCg -3' miRNA: 3'- -GCGGCgUCGACagaCCGGGUa-AGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 210413 | 0.66 | 0.85531 |
Target: 5'- gGaCCGCAGCgugGUC-GGCgUGggCGGCg -3' miRNA: 3'- gC-GGCGUCGa--CAGaCCGgGUaaGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 124054 | 0.66 | 0.85531 |
Target: 5'- uGCCGCGGCgg-C-GGCCCAcgCuGCa -3' miRNA: 3'- gCGGCGUCGacaGaCCGGGUaaGcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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