miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 5' -59.1 NC_003521.1 + 206351 0.71 0.591771
Target:  5'- -uCCGCgAGCUG-CUGGCCUg--CGGCg -3'
miRNA:   3'- gcGGCG-UCGACaGACCGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 206298 0.71 0.601483
Target:  5'- uCGCCGCucGCgcGUCUcGGCCCg--CGGCc -3'
miRNA:   3'- -GCGGCGu-CGa-CAGA-CCGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 30841 0.71 0.611215
Target:  5'- aCGCUgGUGGCcGUCUGGgCCGUccgCGGCa -3'
miRNA:   3'- -GCGG-CGUCGaCAGACCgGGUAa--GCCG- -5'
13971 5' -59.1 NC_003521.1 + 203873 0.71 0.619986
Target:  5'- cCGCUGCgacgaccAGC-GUCgGGCCCAUgaCGGCa -3'
miRNA:   3'- -GCGGCG-------UCGaCAGaCCGGGUAa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 38923 0.71 0.620961
Target:  5'- cCGCCGCcuGCUGUUcGGUCa--UCGGCg -3'
miRNA:   3'- -GCGGCGu-CGACAGaCCGGguaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 26199 0.71 0.630715
Target:  5'- uCGCUGCAGCacagGUauccGGCCagaCGUUCGGCu -3'
miRNA:   3'- -GCGGCGUCGa---CAga--CCGG---GUAAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 104411 0.71 0.630715
Target:  5'- uCGCgGaCGGCUGUCUgccucacacgcGGCCCg--CGGCc -3'
miRNA:   3'- -GCGgC-GUCGACAGA-----------CCGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 43479 0.7 0.64047
Target:  5'- gCGCgGCGGCcGUgCUGGCCg---CGGCg -3'
miRNA:   3'- -GCGgCGUCGaCA-GACCGGguaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 70666 0.7 0.64047
Target:  5'- uGCUGCAGCUGcugCUGGaaaaCCGa-CGGCg -3'
miRNA:   3'- gCGGCGUCGACa--GACCg---GGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 45430 0.7 0.64047
Target:  5'- cCGCCGuCGGCgcgGUCaUGGCCUcgccgUGGCg -3'
miRNA:   3'- -GCGGC-GUCGa--CAG-ACCGGGuaa--GCCG- -5'
13971 5' -59.1 NC_003521.1 + 18073 0.7 0.65022
Target:  5'- aCGCCGUGGCcGUa--GCCCAgaCGGCg -3'
miRNA:   3'- -GCGGCGUCGaCAgacCGGGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 103614 0.7 0.65022
Target:  5'- gGCaCGguGCUGUaCUGGCCCucgaacaGGUa -3'
miRNA:   3'- gCG-GCguCGACA-GACCGGGuaag---CCG- -5'
13971 5' -59.1 NC_003521.1 + 99546 0.7 0.658983
Target:  5'- uGCCGCAGCgGUagguGCCCAUggcguugUUGGCg -3'
miRNA:   3'- gCGGCGUCGaCAgac-CGGGUA-------AGCCG- -5'
13971 5' -59.1 NC_003521.1 + 123907 0.7 0.659956
Target:  5'- gGCCGUAGCUGUCggagcgaaaggGGUCUcccgcCGGCg -3'
miRNA:   3'- gCGGCGUCGACAGa----------CCGGGuaa--GCCG- -5'
13971 5' -59.1 NC_003521.1 + 53031 0.7 0.659956
Target:  5'- uCGCCGCcGCUGUCgaagugGGUCCAgcccagcuccUCGcGCa -3'
miRNA:   3'- -GCGGCGuCGACAGa-----CCGGGUa---------AGC-CG- -5'
13971 5' -59.1 NC_003521.1 + 179414 0.7 0.660928
Target:  5'- uGCCGCAuGCUGUCgcugagcaguuugucGGCCCGUaugaGGUc -3'
miRNA:   3'- gCGGCGU-CGACAGa--------------CCGGGUAag--CCG- -5'
13971 5' -59.1 NC_003521.1 + 169518 0.7 0.677425
Target:  5'- cCGCCGCcccagguGCUGgugccccaggGGCCCGUgccgCGGCc -3'
miRNA:   3'- -GCGGCGu------CGACaga-------CCGGGUAa---GCCG- -5'
13971 5' -59.1 NC_003521.1 + 153079 0.7 0.67936
Target:  5'- uGuCCGCAGCUgGUCUcgGGCUUcgUCuGGCa -3'
miRNA:   3'- gC-GGCGUCGA-CAGA--CCGGGuaAG-CCG- -5'
13971 5' -59.1 NC_003521.1 + 110645 0.7 0.689013
Target:  5'- uCGCCGggcgcCGGCacgGUCacGGCCCggUCGGCc -3'
miRNA:   3'- -GCGGC-----GUCGa--CAGa-CCGGGuaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 201557 0.7 0.689013
Target:  5'- uGgCGCGGCUGUaucGGUCCAacCGGCu -3'
miRNA:   3'- gCgGCGUCGACAga-CCGGGUaaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.