miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 5' -59.1 NC_003521.1 + 208524 1.1 0.002009
Target:  5'- gCGCCGCAGCUGUCUGGCCCAUUCGGCc -3'
miRNA:   3'- -GCGGCGUCGACAGACCGGGUAAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 133499 0.77 0.31163
Target:  5'- gCGCCGCuGCUG-CggGGCCCAacccgCGGCg -3'
miRNA:   3'- -GCGGCGuCGACaGa-CCGGGUaa---GCCG- -5'
13971 5' -59.1 NC_003521.1 + 14643 0.76 0.339804
Target:  5'- aGCUGCAGUgcGUCUGGCCC-UUCuGCg -3'
miRNA:   3'- gCGGCGUCGa-CAGACCGGGuAAGcCG- -5'
13971 5' -59.1 NC_003521.1 + 14790 0.76 0.362118
Target:  5'- uGCUGguGCUG-CUGGaCUgGUUCGGCg -3'
miRNA:   3'- gCGGCguCGACaGACC-GGgUAAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 22400 0.74 0.418016
Target:  5'- uGCCGCcGCUGUCgcUGGCCaugcugcgCGGCg -3'
miRNA:   3'- gCGGCGuCGACAG--ACCGGguaa----GCCG- -5'
13971 5' -59.1 NC_003521.1 + 154076 0.74 0.426421
Target:  5'- aGCCGCAgaaaGCUcaucGUCUGGCCCGUggGGa -3'
miRNA:   3'- gCGGCGU----CGA----CAGACCGGGUAagCCg -5'
13971 5' -59.1 NC_003521.1 + 91603 0.74 0.452224
Target:  5'- gCGCCGCAGCU-UCUugugGGCCUGggUGGCg -3'
miRNA:   3'- -GCGGCGUCGAcAGA----CCGGGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 211585 0.73 0.469891
Target:  5'- uCGCCGCGGCUGga-GGCCCAguagaGGa -3'
miRNA:   3'- -GCGGCGUCGACagaCCGGGUaag--CCg -5'
13971 5' -59.1 NC_003521.1 + 170690 0.73 0.469891
Target:  5'- uCGCCGCAGCUcgaGgccCUgauagcGGCCC-UUCGGCg -3'
miRNA:   3'- -GCGGCGUCGA---Ca--GA------CCGGGuAAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 116674 0.73 0.487904
Target:  5'- aGCCGCcGCUGUU--GCCCGUcgUCGGUg -3'
miRNA:   3'- gCGGCGuCGACAGacCGGGUA--AGCCG- -5'
13971 5' -59.1 NC_003521.1 + 151809 0.73 0.497032
Target:  5'- cCGCCGUGGCgccgGUggGGCCCg--CGGCa -3'
miRNA:   3'- -GCGGCGUCGa---CAgaCCGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 117463 0.73 0.497032
Target:  5'- uCGgUGCGGCUGUCggaGGCCaCGgccgCGGCg -3'
miRNA:   3'- -GCgGCGUCGACAGa--CCGG-GUaa--GCCG- -5'
13971 5' -59.1 NC_003521.1 + 138069 0.73 0.506236
Target:  5'- cCGCCGCggacAGCUGaggcgCUGGCCCucccaGGCc -3'
miRNA:   3'- -GCGGCG----UCGACa----GACCGGGuaag-CCG- -5'
13971 5' -59.1 NC_003521.1 + 192095 0.72 0.553251
Target:  5'- uGCUGCAGCgucgccggcGUCUccaccucucccGGCCUcgUCGGCu -3'
miRNA:   3'- gCGGCGUCGa--------CAGA-----------CCGGGuaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 167587 0.72 0.553251
Target:  5'- aCGCCGCuGCUGUUgccGCUCGUggUGGCg -3'
miRNA:   3'- -GCGGCGuCGACAGac-CGGGUAa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 164621 0.72 0.572434
Target:  5'- uGCCgGCgGGCU-UCUGGCCCAUccugUGGCg -3'
miRNA:   3'- gCGG-CG-UCGAcAGACCGGGUAa---GCCG- -5'
13971 5' -59.1 NC_003521.1 + 116783 0.72 0.572434
Target:  5'- cCGCCGCGGCacgCUGGCCgucuaCGGCc -3'
miRNA:   3'- -GCGGCGUCGacaGACCGGguaa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 131461 0.71 0.582086
Target:  5'- gGCCGC-GCUcUC-GGCCUcgUCGGCc -3'
miRNA:   3'- gCGGCGuCGAcAGaCCGGGuaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 125127 0.71 0.582086
Target:  5'- cCGCCGuCAGCUuggccaGUUU-GCCCAggUCGGCg -3'
miRNA:   3'- -GCGGC-GUCGA------CAGAcCGGGUa-AGCCG- -5'
13971 5' -59.1 NC_003521.1 + 59489 0.71 0.585957
Target:  5'- aCGCUGCAGCUacagaaccagacggcGccCUGGCCCGcgggCGGCc -3'
miRNA:   3'- -GCGGCGUCGA---------------Ca-GACCGGGUaa--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.