miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 5' -59.1 NC_003521.1 + 153009 0.65 0.889354
Target:  5'- aCGUCGCGGaUGUCgcgcuccUGGCCCA---GGCc -3'
miRNA:   3'- -GCGGCGUCgACAG-------ACCGGGUaagCCG- -5'
13971 5' -59.1 NC_003521.1 + 201427 0.66 0.876714
Target:  5'- uGCCaacaggacCAGCUGUacCUGGCCC--UgGGCg -3'
miRNA:   3'- gCGGc-------GUCGACA--GACCGGGuaAgCCG- -5'
13971 5' -59.1 NC_003521.1 + 225875 0.66 0.85531
Target:  5'- uGCCGguGCUccaugcgcGUCUGGCgcugCCGcUCGcGCu -3'
miRNA:   3'- gCGGCguCGA--------CAGACCG----GGUaAGC-CG- -5'
13971 5' -59.1 NC_003521.1 + 115812 0.66 0.861911
Target:  5'- cCGCCGCucaGGCgcggGUggcucagcaggcgCUGGCUCAggcgggCGGCg -3'
miRNA:   3'- -GCGGCG---UCGa---CA-------------GACCGGGUaa----GCCG- -5'
13971 5' -59.1 NC_003521.1 + 74502 0.66 0.869771
Target:  5'- uCG-CGCAGCUG-CUGGagCAgagCGGCa -3'
miRNA:   3'- -GCgGCGUCGACaGACCggGUaa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 187443 0.66 0.862635
Target:  5'- uCGCCGCGGcCUGcUCcuGCUCGgucugUCGGCc -3'
miRNA:   3'- -GCGGCGUC-GAC-AGacCGGGUa----AGCCG- -5'
13971 5' -59.1 NC_003521.1 + 144102 0.66 0.862635
Target:  5'- uGCCucauGCGGCUG-CUGGaCCGccgCGGCc -3'
miRNA:   3'- gCGG----CGUCGACaGACCgGGUaa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 83450 0.66 0.876714
Target:  5'- uCGUCGUAGgUGagacUCUGGCCCAcgUCcaGCa -3'
miRNA:   3'- -GCGGCGUCgAC----AGACCGGGUa-AGc-CG- -5'
13971 5' -59.1 NC_003521.1 + 136752 0.66 0.85531
Target:  5'- uGCCGCgcccgcucgAGCUG-CUGGCCUAccUGcGCg -3'
miRNA:   3'- gCGGCG---------UCGACaGACCGGGUaaGC-CG- -5'
13971 5' -59.1 NC_003521.1 + 55990 0.66 0.869771
Target:  5'- gGCCGCAGCc----GGUCCA--CGGCg -3'
miRNA:   3'- gCGGCGUCGacagaCCGGGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 187916 0.66 0.869066
Target:  5'- uCGaucaGCAGCUcgcgagaGUcCUGGUCgCGUUCGGCg -3'
miRNA:   3'- -GCgg--CGUCGA-------CA-GACCGG-GUAAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 189691 0.66 0.883458
Target:  5'- uCGCUGCGcucguGCUGUCUcaaccaGCCCuccCGGCu -3'
miRNA:   3'- -GCGGCGU-----CGACAGAc-----CGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 129914 0.66 0.85531
Target:  5'- gGCCGCGcgccuGCUGcgcgaacacCUGGCCgAgaCGGCg -3'
miRNA:   3'- gCGGCGU-----CGACa--------GACCGGgUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 131081 0.66 0.883458
Target:  5'- gCGaCCGCGGCUcgcgCgGGCuCCGgaCGGCg -3'
miRNA:   3'- -GC-GGCGUCGAca--GaCCG-GGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 125616 0.66 0.883458
Target:  5'- uCGCCGCGGaugcaGUCcuUGGCCCGcagcaGGUa -3'
miRNA:   3'- -GCGGCGUCga---CAG--ACCGGGUaag--CCG- -5'
13971 5' -59.1 NC_003521.1 + 210413 0.66 0.85531
Target:  5'- gGaCCGCAGCgugGUC-GGCgUGggCGGCg -3'
miRNA:   3'- gC-GGCGUCGa--CAGaCCGgGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 112374 0.66 0.869771
Target:  5'- gGCUGCGGC-GUCUcGUCCAccUGGCu -3'
miRNA:   3'- gCGGCGUCGaCAGAcCGGGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 167787 0.66 0.85531
Target:  5'- uCGUCGaAGUUGa--GGCCCAggUCGGCg -3'
miRNA:   3'- -GCGGCgUCGACagaCCGGGUa-AGCCG- -5'
13971 5' -59.1 NC_003521.1 + 122112 0.66 0.862635
Target:  5'- gGCUGCAGCggcGUCUcGCCg---CGGCu -3'
miRNA:   3'- gCGGCGUCGa--CAGAcCGGguaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 168525 0.66 0.869771
Target:  5'- aCGCCaGCAgGCUGgc-GGCCagcgCGGCg -3'
miRNA:   3'- -GCGG-CGU-CGACagaCCGGguaaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.