Results 21 - 40 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13971 | 5' | -59.1 | NC_003521.1 | + | 107318 | 0.66 | 0.876714 |
Target: 5'- uCGCCGCGG--GUUgGGCCCcgcagcagCGGCg -3' miRNA: 3'- -GCGGCGUCgaCAGaCCGGGuaa-----GCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 92214 | 0.66 | 0.862635 |
Target: 5'- gGCCGCGcgacgagcGCUGUgagGGCCCGacgGGCg -3' miRNA: 3'- gCGGCGU--------CGACAga-CCGGGUaagCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 116421 | 0.66 | 0.869771 |
Target: 5'- -cUCGCGGCUGUC-GGCCCuGUUUGuCa -3' miRNA: 3'- gcGGCGUCGACAGaCCGGG-UAAGCcG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 170088 | 0.66 | 0.869771 |
Target: 5'- gCGCUGCAGCUGgacgaagugCcGGUaCAUcCGGCg -3' miRNA: 3'- -GCGGCGUCGACa--------GaCCGgGUAaGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 168525 | 0.66 | 0.869771 |
Target: 5'- aCGCCaGCAgGCUGgc-GGCCagcgCGGCg -3' miRNA: 3'- -GCGG-CGU-CGACagaCCGGguaaGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 130739 | 0.66 | 0.876714 |
Target: 5'- -aCCGCAGCgcgGUagagCUGGCCU--UCGGg -3' miRNA: 3'- gcGGCGUCGa--CA----GACCGGGuaAGCCg -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 167787 | 0.66 | 0.85531 |
Target: 5'- uCGUCGaAGUUGa--GGCCCAggUCGGCg -3' miRNA: 3'- -GCGGCgUCGACagaCCGGGUa-AGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 43389 | 0.66 | 0.883458 |
Target: 5'- gCGCCGCcuGGCca--UGGCCUcuucgcuUUCGGCg -3' miRNA: 3'- -GCGGCG--UCGacagACCGGGu------AAGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 131081 | 0.66 | 0.883458 |
Target: 5'- gCGaCCGCGGCUcgcgCgGGCuCCGgaCGGCg -3' miRNA: 3'- -GC-GGCGUCGAca--GaCCG-GGUaaGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 17017 | 0.66 | 0.862635 |
Target: 5'- gGCgGCGGCgcaggcccgucGUCUggcGGCCCA--CGGCg -3' miRNA: 3'- gCGgCGUCGa----------CAGA---CCGGGUaaGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 20398 | 0.66 | 0.861911 |
Target: 5'- aCGCCGU-GCUcGUCuuucagcUGGCCUucaccUUCGGCc -3' miRNA: 3'- -GCGGCGuCGA-CAG-------ACCGGGu----AAGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 91010 | 0.66 | 0.876714 |
Target: 5'- aGCUGCAGCagGUC-GGUCaCGgcCGGCc -3' miRNA: 3'- gCGGCGUCGa-CAGaCCGG-GUaaGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 141292 | 0.66 | 0.872572 |
Target: 5'- cCGCUGCGGCacgGUCUccgaccugauccuggGcGCCCuccagCGGCa -3' miRNA: 3'- -GCGGCGUCGa--CAGA---------------C-CGGGuaa--GCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 73000 | 0.66 | 0.869771 |
Target: 5'- gGCCGCucCUGcUCUGGCUgaCAUgcgCGGUg -3' miRNA: 3'- gCGGCGucGAC-AGACCGG--GUAa--GCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 210413 | 0.66 | 0.85531 |
Target: 5'- gGaCCGCAGCgugGUC-GGCgUGggCGGCg -3' miRNA: 3'- gC-GGCGUCGa--CAGaCCGgGUaaGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 197716 | 0.66 | 0.862635 |
Target: 5'- uCGCCGCAGCgcuugGUCa-GCUCG-UCGcGCg -3' miRNA: 3'- -GCGGCGUCGa----CAGacCGGGUaAGC-CG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 124054 | 0.66 | 0.85531 |
Target: 5'- uGCCGCGGCgg-C-GGCCCAcgCuGCa -3' miRNA: 3'- gCGGCGUCGacaGaCCGGGUaaGcCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 1199 | 0.66 | 0.876714 |
Target: 5'- uGCCaacaggacCAGCUGUacCUGGCCC--UgGGCg -3' miRNA: 3'- gCGGc-------GUCGACA--GACCGGGuaAgCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 135616 | 0.66 | 0.867651 |
Target: 5'- aCGCCGCgcAGCUcgcGggcggaucccacgaUCggcggggGGCCCAgcgUCGGCg -3' miRNA: 3'- -GCGGCG--UCGA---C--------------AGa------CCGGGUa--AGCCG- -5' |
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13971 | 5' | -59.1 | NC_003521.1 | + | 189691 | 0.66 | 0.883458 |
Target: 5'- uCGCUGCGcucguGCUGUCUcaaccaGCCCuccCGGCu -3' miRNA: 3'- -GCGGCGU-----CGACAGAc-----CGGGuaaGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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