miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 5' -59.1 NC_003521.1 + 37008 0.67 0.847802
Target:  5'- gCGUCGCGGCggaGUCaGGaccgacaggaguCCUcgUCGGCg -3'
miRNA:   3'- -GCGGCGUCGa--CAGaCC------------GGGuaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 38923 0.71 0.620961
Target:  5'- cCGCCGCcuGCUGUUcGGUCa--UCGGCg -3'
miRNA:   3'- -GCGGCGu-CGACAGaCCGGguaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 40735 0.67 0.840116
Target:  5'- uGaCUGCAGCUGUgugCUGGCgaggCCAagcCGGCg -3'
miRNA:   3'- gC-GGCGUCGACA---GACCG----GGUaa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 43389 0.66 0.883458
Target:  5'- gCGCCGCcuGGCca--UGGCCUcuucgcuUUCGGCg -3'
miRNA:   3'- -GCGGCG--UCGacagACCGGGu------AAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 43479 0.7 0.64047
Target:  5'- gCGCgGCGGCcGUgCUGGCCg---CGGCg -3'
miRNA:   3'- -GCGgCGUCGaCA-GACCGGguaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 43835 0.67 0.816052
Target:  5'- cCGCCGcCGGCcG-CgGGCCCGUcacaGGCg -3'
miRNA:   3'- -GCGGC-GUCGaCaGaCCGGGUAag--CCG- -5'
13971 5' -59.1 NC_003521.1 + 44152 0.67 0.847802
Target:  5'- aCGCCgucgucgaGCAGCaG-CUGGCgCcgUCGGUa -3'
miRNA:   3'- -GCGG--------CGUCGaCaGACCGgGuaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 45430 0.7 0.64047
Target:  5'- cCGCCGuCGGCgcgGUCaUGGCCUcgccgUGGCg -3'
miRNA:   3'- -GCGGC-GUCGa--CAG-ACCGGGuaa--GCCG- -5'
13971 5' -59.1 NC_003521.1 + 50320 0.69 0.736476
Target:  5'- aGCCagggagGCAGCggGUCcucGGCCCGUUUGcGCu -3'
miRNA:   3'- gCGG------CGUCGa-CAGa--CCGGGUAAGC-CG- -5'
13971 5' -59.1 NC_003521.1 + 52587 0.69 0.736476
Target:  5'- gCGCgGgCAGCUGg-UGGCCCGaaaggcCGGCa -3'
miRNA:   3'- -GCGgC-GUCGACagACCGGGUaa----GCCG- -5'
13971 5' -59.1 NC_003521.1 + 53031 0.7 0.659956
Target:  5'- uCGCCGCcGCUGUCgaagugGGUCCAgcccagcuccUCGcGCa -3'
miRNA:   3'- -GCGGCGuCGACAGa-----CCGGGUa---------AGC-CG- -5'
13971 5' -59.1 NC_003521.1 + 53395 0.7 0.689013
Target:  5'- gGCCGCGGCgagcagGggaUGGCgCG-UCGGCa -3'
miRNA:   3'- gCGGCGUCGa-----Cag-ACCGgGUaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 54530 0.67 0.816052
Target:  5'- aCGgCGCcGCUGg--GGCCCgg-CGGCu -3'
miRNA:   3'- -GCgGCGuCGACagaCCGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 55990 0.66 0.869771
Target:  5'- gGCCGCAGCc----GGUCCA--CGGCg -3'
miRNA:   3'- gCGGCGUCGacagaCCGGGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 59489 0.71 0.585957
Target:  5'- aCGCUGCAGCUacagaaccagacggcGccCUGGCCCGcgggCGGCc -3'
miRNA:   3'- -GCGGCGUCGA---------------Ca-GACCGGGUaa--GCCG- -5'
13971 5' -59.1 NC_003521.1 + 63032 0.68 0.75494
Target:  5'- aCGCCcacCAGCgGaCaGGCCCcgUCGGCc -3'
miRNA:   3'- -GCGGc--GUCGaCaGaCCGGGuaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 65719 0.68 0.790624
Target:  5'- gCGCCGCGGC-----GGCCCuggcCGGCa -3'
miRNA:   3'- -GCGGCGUCGacagaCCGGGuaa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 70666 0.7 0.64047
Target:  5'- uGCUGCAGCUGcugCUGGaaaaCCGa-CGGCg -3'
miRNA:   3'- gCGGCGUCGACa--GACCg---GGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 71287 0.67 0.832258
Target:  5'- gGCCGCGGCacg--GGCCCcUggGGCa -3'
miRNA:   3'- gCGGCGUCGacagaCCGGGuAagCCG- -5'
13971 5' -59.1 NC_003521.1 + 73000 0.66 0.869771
Target:  5'- gGCCGCucCUGcUCUGGCUgaCAUgcgCGGUg -3'
miRNA:   3'- gCGGCGucGAC-AGACCGG--GUAa--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.