miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 5' -59.1 NC_003521.1 + 413 0.67 0.840116
Target:  5'- uGaCUGCAGCUGUgugCUGGCgaggCCAagcCGGCg -3'
miRNA:   3'- gC-GGCGUCGACA---GACCG----GGUaa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 1199 0.66 0.876714
Target:  5'- uGCCaacaggacCAGCUGUacCUGGCCC--UgGGCg -3'
miRNA:   3'- gCGGc-------GUCGACA--GACCGGGuaAgCCG- -5'
13971 5' -59.1 NC_003521.1 + 1329 0.7 0.689013
Target:  5'- uGgCGCGGCUGUaucGGUCCAacCGGCu -3'
miRNA:   3'- gCgGCGUCGACAga-CCGGGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 7808 0.67 0.847041
Target:  5'- aGCgGCAGCUGgacGGCgucaaggCCAUcCGGCg -3'
miRNA:   3'- gCGgCGUCGACagaCCG-------GGUAaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 7960 0.69 0.708182
Target:  5'- uCGCCGCGG-UGUCgcggccgggagGGUCCGcggCGGCg -3'
miRNA:   3'- -GCGGCGUCgACAGa----------CCGGGUaa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 14643 0.76 0.339804
Target:  5'- aGCUGCAGUgcGUCUGGCCC-UUCuGCg -3'
miRNA:   3'- gCGGCGUCGa-CAGACCGGGuAAGcCG- -5'
13971 5' -59.1 NC_003521.1 + 14790 0.76 0.362118
Target:  5'- uGCUGguGCUG-CUGGaCUgGUUCGGCg -3'
miRNA:   3'- gCGGCguCGACaGACC-GGgUAAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 16291 0.69 0.727116
Target:  5'- gCGCCGUGGgUGcCUaccGGCCCgg-CGGCu -3'
miRNA:   3'- -GCGGCGUCgACaGA---CCGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 17017 0.66 0.862635
Target:  5'- gGCgGCGGCgcaggcccgucGUCUggcGGCCCA--CGGCg -3'
miRNA:   3'- gCGgCGUCGa----------CAGA---CCGGGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 17498 0.67 0.839338
Target:  5'- gCGCCGCcggucacGGCgGUUcccGGCCCgg-CGGCg -3'
miRNA:   3'- -GCGGCG-------UCGaCAGa--CCGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 18073 0.7 0.65022
Target:  5'- aCGCCGUGGCcGUa--GCCCAgaCGGCg -3'
miRNA:   3'- -GCGGCGUCGaCAgacCGGGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 18569 0.67 0.829868
Target:  5'- gCGCgCGCAGCUGgagagcgcgCUcgacugguuccugcGGCCCAgccgCGGUc -3'
miRNA:   3'- -GCG-GCGUCGACa--------GA--------------CCGGGUaa--GCCG- -5'
13971 5' -59.1 NC_003521.1 + 18717 0.66 0.862635
Target:  5'- gGCUGUGGCUGccgCUGGCggcggcgaUCGUggCGGCg -3'
miRNA:   3'- gCGGCGUCGACa--GACCG--------GGUAa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 20398 0.66 0.861911
Target:  5'- aCGCCGU-GCUcGUCuuucagcUGGCCUucaccUUCGGCc -3'
miRNA:   3'- -GCGGCGuCGA-CAG-------ACCGGGu----AAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 22400 0.74 0.418016
Target:  5'- uGCCGCcGCUGUCgcUGGCCaugcugcgCGGCg -3'
miRNA:   3'- gCGGCGuCGACAG--ACCGGguaa----GCCG- -5'
13971 5' -59.1 NC_003521.1 + 23990 0.69 0.708182
Target:  5'- cCGCCGCgGGCUGcgaccucCUGcGCgCCAUcCGGCg -3'
miRNA:   3'- -GCGGCG-UCGACa------GAC-CG-GGUAaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 26199 0.71 0.630715
Target:  5'- uCGCUGCAGCacagGUauccGGCCagaCGUUCGGCu -3'
miRNA:   3'- -GCGGCGUCGa---CAga--CCGG---GUAAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 30841 0.71 0.611215
Target:  5'- aCGCUgGUGGCcGUCUGGgCCGUccgCGGCa -3'
miRNA:   3'- -GCGG-CGUCGaCAGACCgGGUAa--GCCG- -5'
13971 5' -59.1 NC_003521.1 + 32891 0.67 0.832258
Target:  5'- cCGCCGguGCUGcCgccGuGCCCGccgccccCGGCg -3'
miRNA:   3'- -GCGGCguCGACaGa--C-CGGGUaa-----GCCG- -5'
13971 5' -59.1 NC_003521.1 + 33142 0.69 0.736476
Target:  5'- aCGCCGaugacgaAGCcG-UUGGCCUcgUCGGCc -3'
miRNA:   3'- -GCGGCg------UCGaCaGACCGGGuaAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.