miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 5' -59.1 NC_003521.1 + 233399 0.68 0.764029
Target:  5'- uGCCGCuGCcGUCucggcuccUGGCCCcggUGGCu -3'
miRNA:   3'- gCGGCGuCGaCAG--------ACCGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 229067 0.67 0.832258
Target:  5'- aGCCGUccccagGGCgaGUCgGGCCCGUcgaugaCGGCc -3'
miRNA:   3'- gCGGCG------UCGa-CAGaCCGGGUAa-----GCCG- -5'
13971 5' -59.1 NC_003521.1 + 228256 0.69 0.745754
Target:  5'- cCGCCGUGGUggucgGUUUGGCCagcaCGGUg -3'
miRNA:   3'- -GCGGCGUCGa----CAGACCGGguaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 226627 0.68 0.790624
Target:  5'- uCGCCGCAGCacaccagcuUGcUCgcGGCCUucUUGGCg -3'
miRNA:   3'- -GCGGCGUCG---------AC-AGa-CCGGGuaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 225875 0.66 0.85531
Target:  5'- uGCCGguGCUccaugcgcGUCUGGCgcugCCGcUCGcGCu -3'
miRNA:   3'- gCGGCguCGA--------CAGACCG----GGUaAGC-CG- -5'
13971 5' -59.1 NC_003521.1 + 224011 0.68 0.781878
Target:  5'- uGCgGCAGCgg-CgGGCCCGgcggUCGGg -3'
miRNA:   3'- gCGgCGUCGacaGaCCGGGUa---AGCCg -5'
13971 5' -59.1 NC_003521.1 + 223861 0.68 0.764029
Target:  5'- uGCUGCGGCUGUCccucgGGUaCCAcguugUCGGg -3'
miRNA:   3'- gCGGCGUCGACAGa----CCG-GGUa----AGCCg -5'
13971 5' -59.1 NC_003521.1 + 223470 0.68 0.794086
Target:  5'- cCGCCGCgccGGC-GUCacGGCCCGggagguggggcggaUCGGCg -3'
miRNA:   3'- -GCGGCG---UCGaCAGa-CCGGGUa-------------AGCCG- -5'
13971 5' -59.1 NC_003521.1 + 219168 0.69 0.736476
Target:  5'- gCGCCGCAGCgUGUuccaguggcggCUgagccccaGGCCCAUgauGGCg -3'
miRNA:   3'- -GCGGCGUCG-ACA-----------GA--------CCGGGUAag-CCG- -5'
13971 5' -59.1 NC_003521.1 + 216612 0.67 0.813568
Target:  5'- cCGCUGguGCUG-CUGuuggacgacguuccGCCCAUgccgccCGGCu -3'
miRNA:   3'- -GCGGCguCGACaGAC--------------CGGGUAa-----GCCG- -5'
13971 5' -59.1 NC_003521.1 + 216411 0.67 0.840116
Target:  5'- gCGCCGUcuGGCUuUCUaugcuccgcgGGCCCGgcgcCGGCu -3'
miRNA:   3'- -GCGGCG--UCGAcAGA----------CCGGGUaa--GCCG- -5'
13971 5' -59.1 NC_003521.1 + 215444 0.68 0.75494
Target:  5'- aGCCGCGGgUG-CUGGCgCCA---GGCc -3'
miRNA:   3'- gCGGCGUCgACaGACCG-GGUaagCCG- -5'
13971 5' -59.1 NC_003521.1 + 214638 0.67 0.832258
Target:  5'- uGCUGCAGCgagcggCUGcGCUUcgUUGGCa -3'
miRNA:   3'- gCGGCGUCGaca---GAC-CGGGuaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 213838 0.69 0.708182
Target:  5'- aGUCGCAGCaGUUcGGCCCAgucUCGcuGCa -3'
miRNA:   3'- gCGGCGUCGaCAGaCCGGGUa--AGC--CG- -5'
13971 5' -59.1 NC_003521.1 + 213140 0.67 0.850827
Target:  5'- gGCCGCAGCgaacugaagacgUUGGUCCAg--GGCa -3'
miRNA:   3'- gCGGCGUCGaca---------GACCGGGUaagCCG- -5'
13971 5' -59.1 NC_003521.1 + 212004 0.69 0.708182
Target:  5'- gCGCCGCAGacacgccagGUaCUGGCCg--UCGGUg -3'
miRNA:   3'- -GCGGCGUCga-------CA-GACCGGguaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 211585 0.73 0.469891
Target:  5'- uCGCCGCGGCUGga-GGCCCAguagaGGa -3'
miRNA:   3'- -GCGGCGUCGACagaCCGGGUaag--CCg -5'
13971 5' -59.1 NC_003521.1 + 210413 0.66 0.85531
Target:  5'- gGaCCGCAGCgugGUC-GGCgUGggCGGCg -3'
miRNA:   3'- gC-GGCGUCGa--CAGaCCGgGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 209977 0.67 0.832258
Target:  5'- uGCCGCGGac----GGCCCAgaCGGCc -3'
miRNA:   3'- gCGGCGUCgacagaCCGGGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 209931 0.69 0.736476
Target:  5'- uGCCGCAGUUcagCUcGGCCCucUCGGa -3'
miRNA:   3'- gCGGCGUCGAca-GA-CCGGGuaAGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.