miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 5' -59.1 NC_003521.1 + 110645 0.7 0.689013
Target:  5'- uCGCCGggcgcCGGCacgGUCacGGCCCggUCGGCc -3'
miRNA:   3'- -GCGGC-----GUCGa--CAGa-CCGGGuaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 104411 0.71 0.630715
Target:  5'- uCGCgGaCGGCUGUCUgccucacacgcGGCCCg--CGGCc -3'
miRNA:   3'- -GCGgC-GUCGACAGA-----------CCGGGuaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 70666 0.7 0.64047
Target:  5'- uGCUGCAGCUGcugCUGGaaaaCCGa-CGGCg -3'
miRNA:   3'- gCGGCGUCGACa--GACCg---GGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 43479 0.7 0.64047
Target:  5'- gCGCgGCGGCcGUgCUGGCCg---CGGCg -3'
miRNA:   3'- -GCGgCGUCGaCA-GACCGGguaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 103614 0.7 0.65022
Target:  5'- gGCaCGguGCUGUaCUGGCCCucgaacaGGUa -3'
miRNA:   3'- gCG-GCguCGACA-GACCGGGuaag---CCG- -5'
13971 5' -59.1 NC_003521.1 + 99546 0.7 0.658983
Target:  5'- uGCCGCAGCgGUagguGCCCAUggcguugUUGGCg -3'
miRNA:   3'- gCGGCGUCGaCAgac-CGGGUA-------AGCCG- -5'
13971 5' -59.1 NC_003521.1 + 53031 0.7 0.659956
Target:  5'- uCGCCGCcGCUGUCgaagugGGUCCAgcccagcuccUCGcGCa -3'
miRNA:   3'- -GCGGCGuCGACAGa-----CCGGGUa---------AGC-CG- -5'
13971 5' -59.1 NC_003521.1 + 156003 0.7 0.689013
Target:  5'- gCGCUGC-GCgagCUGGCCCGUaUCGaGCu -3'
miRNA:   3'- -GCGGCGuCGacaGACCGGGUA-AGC-CG- -5'
13971 5' -59.1 NC_003521.1 + 201557 0.7 0.689013
Target:  5'- uGgCGCGGCUGUaucGGUCCAacCGGCu -3'
miRNA:   3'- gCgGCGUCGACAga-CCGGGUaaGCCG- -5'
13971 5' -59.1 NC_003521.1 + 26199 0.71 0.630715
Target:  5'- uCGCUGCAGCacagGUauccGGCCagaCGUUCGGCu -3'
miRNA:   3'- -GCGGCGUCGa---CAga--CCGG---GUAAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 38923 0.71 0.620961
Target:  5'- cCGCCGCcuGCUGUUcGGUCa--UCGGCg -3'
miRNA:   3'- -GCGGCGu-CGACAGaCCGGguaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 203873 0.71 0.619986
Target:  5'- cCGCUGCgacgaccAGC-GUCgGGCCCAUgaCGGCa -3'
miRNA:   3'- -GCGGCG-------UCGaCAGaCCGGGUAa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 154076 0.74 0.426421
Target:  5'- aGCCGCAgaaaGCUcaucGUCUGGCCCGUggGGa -3'
miRNA:   3'- gCGGCGU----CGA----CAGACCGGGUAagCCg -5'
13971 5' -59.1 NC_003521.1 + 116674 0.73 0.487904
Target:  5'- aGCCGCcGCUGUU--GCCCGUcgUCGGUg -3'
miRNA:   3'- gCGGCGuCGACAGacCGGGUA--AGCCG- -5'
13971 5' -59.1 NC_003521.1 + 138069 0.73 0.506236
Target:  5'- cCGCCGCggacAGCUGaggcgCUGGCCCucccaGGCc -3'
miRNA:   3'- -GCGGCG----UCGACa----GACCGGGuaag-CCG- -5'
13971 5' -59.1 NC_003521.1 + 167587 0.72 0.553251
Target:  5'- aCGCCGCuGCUGUUgccGCUCGUggUGGCg -3'
miRNA:   3'- -GCGGCGuCGACAGac-CGGGUAa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 192095 0.72 0.553251
Target:  5'- uGCUGCAGCgucgccggcGUCUccaccucucccGGCCUcgUCGGCu -3'
miRNA:   3'- gCGGCGUCGa--------CAGA-----------CCGGGuaAGCCG- -5'
13971 5' -59.1 NC_003521.1 + 116783 0.72 0.572434
Target:  5'- cCGCCGCGGCacgCUGGCCgucuaCGGCc -3'
miRNA:   3'- -GCGGCGUCGacaGACCGGguaa-GCCG- -5'
13971 5' -59.1 NC_003521.1 + 125127 0.71 0.582086
Target:  5'- cCGCCGuCAGCUuggccaGUUU-GCCCAggUCGGCg -3'
miRNA:   3'- -GCGGC-GUCGA------CAGAcCGGGUa-AGCCG- -5'
13971 5' -59.1 NC_003521.1 + 131461 0.71 0.582086
Target:  5'- gGCCGC-GCUcUC-GGCCUcgUCGGCc -3'
miRNA:   3'- gCGGCGuCGAcAGaCCGGGuaAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.