miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 3' -55.2 NC_003521.1 + 52281 0.67 0.950135
Target:  5'- -cGGAGcGGCguucaUGGUGAUGGCGAcGUGGg -3'
miRNA:   3'- uaCCUC-UCGa----GCUACUGCUGCU-CGCC- -5'
13972 3' -55.2 NC_003521.1 + 43593 0.68 0.937019
Target:  5'- -cGGGcGGCgaCGAgGACGACGAGCGc -3'
miRNA:   3'- uaCCUcUCGa-GCUaCUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 204465 0.68 0.941613
Target:  5'- -aGGuAGuGCUCGuaggccgucagGUGAUagGACGAGCGGu -3'
miRNA:   3'- uaCC-UCuCGAGC-----------UACUG--CUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 108290 0.68 0.937019
Target:  5'- --cGAGGGCggugguggCGGUGACGACGAcGUGa -3'
miRNA:   3'- uacCUCUCGa-------GCUACUGCUGCU-CGCc -5'
13972 3' -55.2 NC_003521.1 + 177919 0.68 0.9322
Target:  5'- -gGGAGGGCgucgUCGGgaggGAUGGgGAGUGGc -3'
miRNA:   3'- uaCCUCUCG----AGCUa---CUGCUgCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 123544 0.68 0.936073
Target:  5'- -aGGGGAGCcggcaccacggcCGAcGACGGCGguGGCGGg -3'
miRNA:   3'- uaCCUCUCGa-----------GCUaCUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 222805 0.68 0.926639
Target:  5'- cGUGGuAGcgcGGCUCGGUGguggaaaACGGCGucuGCGGg -3'
miRNA:   3'- -UACC-UC---UCGAGCUAC-------UGCUGCu--CGCC- -5'
13972 3' -55.2 NC_003521.1 + 146791 0.68 0.927155
Target:  5'- -aGGAGAcGgaCGAUgauccggaccugGACGACGAGCGc -3'
miRNA:   3'- uaCCUCU-CgaGCUA------------CUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 19340 0.68 0.9322
Target:  5'- -cGGGGAGCUCc--GGCGAgGAGCc- -3'
miRNA:   3'- uaCCUCUCGAGcuaCUGCUgCUCGcc -5'
13972 3' -55.2 NC_003521.1 + 28064 0.68 0.941613
Target:  5'- -gGGAGAGaCagGAggggggagGACGACG-GCGGg -3'
miRNA:   3'- uaCCUCUC-GagCUa-------CUGCUGCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 153391 0.69 0.898564
Target:  5'- gGUGGGGGGCUgGAUGggaaagGCGACGAuccccuggGCGu -3'
miRNA:   3'- -UACCUCUCGAgCUAC------UGCUGCU--------CGCc -5'
13972 3' -55.2 NC_003521.1 + 148483 0.69 0.904728
Target:  5'- -cGGAGGGUUCcggGAgcgaGGCGGGCGGa -3'
miRNA:   3'- uaCCUCUCGAGcuaCUg---CUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 150553 0.69 0.892181
Target:  5'- gGUGGuGGuGCgggUGGUGGCGGCG-GCGGc -3'
miRNA:   3'- -UACCuCU-CGa--GCUACUGCUGCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 33084 0.69 0.898564
Target:  5'- gAUGGccuucugcacGGGCUccagccagcCGAUGACGGCGuAGCGGg -3'
miRNA:   3'- -UACCu---------CUCGA---------GCUACUGCUGC-UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 76339 0.69 0.91639
Target:  5'- -cGGAG-GCgaCGGUGACGGCugcGGCGGc -3'
miRNA:   3'- uaCCUCuCGa-GCUACUGCUGc--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 7733 0.69 0.91639
Target:  5'- -gGGAGGGCggcgCGA--GCGGCGgaGGCGGc -3'
miRNA:   3'- uaCCUCUCGa---GCUacUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 99188 0.69 0.898564
Target:  5'- cUGG-GGGCUgaaGGUGGCGGCGgaggauacGGCGGg -3'
miRNA:   3'- uACCuCUCGAg--CUACUGCUGC--------UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 181881 0.69 0.91639
Target:  5'- -cGGcGAGCUCGccGAUGACGuucGUGGu -3'
miRNA:   3'- uaCCuCUCGAGCuaCUGCUGCu--CGCC- -5'
13972 3' -55.2 NC_003521.1 + 103649 0.69 0.898564
Target:  5'- -gGGGGcAGCUCGgcGGCGGCcgcuGCGGc -3'
miRNA:   3'- uaCCUC-UCGAGCuaCUGCUGcu--CGCC- -5'
13972 3' -55.2 NC_003521.1 + 125705 0.69 0.892181
Target:  5'- aGUGGAGAcGCcggCGGUcACGACGggGGCGGc -3'
miRNA:   3'- -UACCUCU-CGa--GCUAcUGCUGC--UCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.