miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 3' -55.2 NC_003521.1 + 13676 0.66 0.970587
Target:  5'- -cGGAGAGggUGgcGGCGACGAcuuGCGa -3'
miRNA:   3'- uaCCUCUCgaGCuaCUGCUGCU---CGCc -5'
13972 3' -55.2 NC_003521.1 + 218710 0.67 0.954068
Target:  5'- -aGGAGAcggCGgcGGCGGCGGGCGa -3'
miRNA:   3'- uaCCUCUcgaGCuaCUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 113600 0.67 0.961291
Target:  5'- cGUGGAGGaccaccGCgccagcGACGACGAGUGGa -3'
miRNA:   3'- -UACCUCU------CGagcua-CUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 210531 0.67 0.961291
Target:  5'- cUGaAGAGCuacuUCGAcGACGugGAGCGc -3'
miRNA:   3'- uACcUCUCG----AGCUaCUGCugCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 101839 0.67 0.945985
Target:  5'- gGUGGcGGGCUcCGGguUGugGAUG-GCGGa -3'
miRNA:   3'- -UACCuCUCGA-GCU--ACugCUGCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 91188 0.67 0.950135
Target:  5'- -aGGAGAGCaccUCGccGGCGGCGuccAGCGc -3'
miRNA:   3'- uaCCUCUCG---AGCuaCUGCUGC---UCGCc -5'
13972 3' -55.2 NC_003521.1 + 230969 0.67 0.96459
Target:  5'- -cGG-GAGCUCGAagggugcuaucaUGACG-CcAGCGGg -3'
miRNA:   3'- uaCCuCUCGAGCU------------ACUGCuGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 168479 0.67 0.96459
Target:  5'- cUGGucAGgUCGAUcaugGGCGGCGAGaCGGa -3'
miRNA:   3'- uACCucUCgAGCUA----CUGCUGCUC-GCC- -5'
13972 3' -55.2 NC_003521.1 + 118701 0.67 0.957785
Target:  5'- gGUGGAGggcaGGCUCaugGGCGAgGGGCGcGg -3'
miRNA:   3'- -UACCUC----UCGAGcuaCUGCUgCUCGC-C- -5'
13972 3' -55.2 NC_003521.1 + 167665 0.67 0.956692
Target:  5'- -aGGAGAggagugacgugcucGCgguugCGGUGACGACGcucguggaggaGGCGGc -3'
miRNA:   3'- uaCCUCU--------------CGa----GCUACUGCUGC-----------UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 206463 0.67 0.954068
Target:  5'- -gGGGGAuuGCcccaUCGGUGGCGucaACGAGCGa -3'
miRNA:   3'- uaCCUCU--CG----AGCUACUGC---UGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 33618 0.67 0.96459
Target:  5'- -aGGAaccgGAGgaCGAUGcCGcCGAGCGGc -3'
miRNA:   3'- uaCCU----CUCgaGCUACuGCuGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 32721 0.67 0.954068
Target:  5'- gGUGGGGGGU----UGGCGACGccaccAGCGGg -3'
miRNA:   3'- -UACCUCUCGagcuACUGCUGC-----UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 52281 0.67 0.950135
Target:  5'- -cGGAGcGGCguucaUGGUGAUGGCGAcGUGGg -3'
miRNA:   3'- uaCCUC-UCGa----GCUACUGCUGCU-CGCC- -5'
13972 3' -55.2 NC_003521.1 + 131056 0.67 0.950135
Target:  5'- -cGGcGGGCcucuggacgCGGUGGCGGCGAccGCGGc -3'
miRNA:   3'- uaCCuCUCGa--------GCUACUGCUGCU--CGCC- -5'
13972 3' -55.2 NC_003521.1 + 137452 0.67 0.945985
Target:  5'- cGUGGAGGuaUCGcgcacCGACGAGUGGa -3'
miRNA:   3'- -UACCUCUcgAGCuacu-GCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 207677 0.67 0.945985
Target:  5'- -cGcGAGGGa--GAUGACGGCGAGCc- -3'
miRNA:   3'- uaC-CUCUCgagCUACUGCUGCUCGcc -5'
13972 3' -55.2 NC_003521.1 + 6510 0.67 0.950135
Target:  5'- -cGGcAGAgGCUcacCGGUGACGA-GGGCGGu -3'
miRNA:   3'- uaCC-UCU-CGA---GCUACUGCUgCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 148348 0.67 0.957785
Target:  5'- -cGGAGAgGCUgGGaGACcccCGAGCGGg -3'
miRNA:   3'- uaCCUCU-CGAgCUaCUGcu-GCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 54625 0.67 0.96459
Target:  5'- gGUGGGGuGuUUCGAaGAUGAuuuaUGAGCGGa -3'
miRNA:   3'- -UACCUCuC-GAGCUaCUGCU----GCUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.