miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 3' -55.2 NC_003521.1 + 46402 0.66 0.978163
Target:  5'- cGUGGGGcGCgCGGgccaggaagcGGCGACGGGCGa -3'
miRNA:   3'- -UACCUCuCGaGCUa---------CUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 46786 0.66 0.974327
Target:  5'- -cGGAGGGCagaUCGGUGAacaugcccauggguaUGACGccGGUGGg -3'
miRNA:   3'- uaCCUCUCG---AGCUACU---------------GCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 47554 0.72 0.791419
Target:  5'- cAUGucGAGCgggGAaGACGGCGAGCGGg -3'
miRNA:   3'- -UACcuCUCGag-CUaCUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 50828 0.66 0.978163
Target:  5'- gGUGGuGGGagCGGUGACGGCGgcuuuuugagaaGGUGGa -3'
miRNA:   3'- -UACCuCUCgaGCUACUGCUGC------------UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 52281 0.67 0.950135
Target:  5'- -cGGAGcGGCguucaUGGUGAUGGCGAcGUGGg -3'
miRNA:   3'- uaCCUC-UCGa----GCUACUGCUGCU-CGCC- -5'
13972 3' -55.2 NC_003521.1 + 54625 0.67 0.96459
Target:  5'- gGUGGGGuGuUUCGAaGAUGAuuuaUGAGCGGa -3'
miRNA:   3'- -UACCUCuC-GAGCUaCUGCU----GCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 69746 0.66 0.979052
Target:  5'- -cGGGGAgGCggCGGUGGCacaagugcaugaucgGACGGGCGa -3'
miRNA:   3'- uaCCUCU-CGa-GCUACUG---------------CUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 74773 0.66 0.970587
Target:  5'- cGUGGcuGGAGUaUGAcGACGGCGgcAGCGGu -3'
miRNA:   3'- -UACC--UCUCGaGCUaCUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 76048 0.72 0.787874
Target:  5'- -cGGAGcgggccgccagacGCUUGAUGACGGCGAuguGCGGc -3'
miRNA:   3'- uaCCUCu------------CGAGCUACUGCUGCU---CGCC- -5'
13972 3' -55.2 NC_003521.1 + 76339 0.69 0.91639
Target:  5'- -cGGAG-GCgaCGGUGACGGCugcGGCGGc -3'
miRNA:   3'- uaCCUCuCGa-GCUACUGCUGc--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 80271 0.69 0.898564
Target:  5'- -cGGAGcuuGGUUCGAaGACGACGGcGCGu -3'
miRNA:   3'- uaCCUC---UCGAGCUaCUGCUGCU-CGCc -5'
13972 3' -55.2 NC_003521.1 + 80951 0.71 0.841719
Target:  5'- -aGGAG-GC-CGAUGACGACGAugaGGa -3'
miRNA:   3'- uaCCUCuCGaGCUACUGCUGCUcg-CC- -5'
13972 3' -55.2 NC_003521.1 + 86696 0.69 0.91067
Target:  5'- cUGGcGGGCcgcggCGgcGACGACGAGgCGGu -3'
miRNA:   3'- uACCuCUCGa----GCuaCUGCUGCUC-GCC- -5'
13972 3' -55.2 NC_003521.1 + 89917 0.71 0.800187
Target:  5'- cGUGGaAGGGCgcgcagUCGAUGACGccgGCGuGCGGc -3'
miRNA:   3'- -UACC-UCUCG------AGCUACUGC---UGCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 91188 0.67 0.950135
Target:  5'- -aGGAGAGCaccUCGccGGCGGCGuccAGCGc -3'
miRNA:   3'- uaCCUCUCG---AGCuaCUGCUGC---UCGCc -5'
13972 3' -55.2 NC_003521.1 + 98239 0.66 0.970587
Target:  5'- -cGGGGAGg-CGggGGCGGCcacGGCGGg -3'
miRNA:   3'- uaCCUCUCgaGCuaCUGCUGc--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 98624 0.73 0.726717
Target:  5'- -aGGAGGGCgagagCGgcGGCGGCGguAGCGGc -3'
miRNA:   3'- uaCCUCUCGa----GCuaCUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 99183 0.66 0.978163
Target:  5'- uGUGGcugAGGGUcacgUCGGUGACGGCc-GCGGc -3'
miRNA:   3'- -UACC---UCUCG----AGCUACUGCUGcuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 99188 0.69 0.898564
Target:  5'- cUGG-GGGCUgaaGGUGGCGGCGgaggauacGGCGGg -3'
miRNA:   3'- uACCuCUCGAg--CUACUGCUGC--------UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 100569 0.79 0.387557
Target:  5'- -aGGAGGGCaCGAggagGACGACGAcGCGGa -3'
miRNA:   3'- uaCCUCUCGaGCUa---CUGCUGCU-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.