miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 3' -55.2 NC_003521.1 + 348 0.72 0.782517
Target:  5'- -aGGAGGGCaaaCGAUGugGGCG-GCGu -3'
miRNA:   3'- uaCCUCUCGa--GCUACugCUGCuCGCc -5'
13972 3' -55.2 NC_003521.1 + 6510 0.67 0.950135
Target:  5'- -cGGcAGAgGCUcacCGGUGACGA-GGGCGGu -3'
miRNA:   3'- uaCC-UCU-CGA---GCUACUGCUgCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 7733 0.69 0.91639
Target:  5'- -gGGAGGGCggcgCGA--GCGGCGgaGGCGGc -3'
miRNA:   3'- uaCCUCUCGa---GCUacUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 13676 0.66 0.970587
Target:  5'- -cGGAGAGggUGgcGGCGACGAcuuGCGa -3'
miRNA:   3'- uaCCUCUCgaGCuaCUGCUGCU---CGCc -5'
13972 3' -55.2 NC_003521.1 + 17053 0.66 0.975819
Target:  5'- -cGGuaacGGCgccgacagCGAgGACGACGAGUGGg -3'
miRNA:   3'- uaCCuc--UCGa-------GCUaCUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 19041 0.7 0.878775
Target:  5'- -cGGAcgcugGAGCuUCGAgGACGGCGGcGCGGc -3'
miRNA:   3'- uaCCU-----CUCG-AGCUaCUGCUGCU-CGCC- -5'
13972 3' -55.2 NC_003521.1 + 19340 0.68 0.9322
Target:  5'- -cGGGGAGCUCc--GGCGAgGAGCc- -3'
miRNA:   3'- uaCCUCUCGAGcuaCUGCUgCUCGcc -5'
13972 3' -55.2 NC_003521.1 + 26039 0.66 0.978163
Target:  5'- gGUGaAGAGgaCG---GCGGCGAGCGGg -3'
miRNA:   3'- -UACcUCUCgaGCuacUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 28064 0.68 0.941613
Target:  5'- -gGGAGAGaCagGAggggggagGACGACG-GCGGg -3'
miRNA:   3'- uaCCUCUC-GagCUa-------CUGCUGCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 32721 0.67 0.954068
Target:  5'- gGUGGGGGGU----UGGCGACGccaccAGCGGg -3'
miRNA:   3'- -UACCUCUCGagcuACUGCUGC-----UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 33084 0.69 0.898564
Target:  5'- gAUGGccuucugcacGGGCUccagccagcCGAUGACGGCGuAGCGGg -3'
miRNA:   3'- -UACCu---------CUCGA---------GCUACUGCUGC-UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 33618 0.67 0.96459
Target:  5'- -aGGAaccgGAGgaCGAUGcCGcCGAGCGGc -3'
miRNA:   3'- uaCCU----CUCgaGCUACuGCuGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 36334 0.71 0.836955
Target:  5'- cGUGGGGAcaugcgacuuuagggGCUCGGgcUGGCGugGcGCGGc -3'
miRNA:   3'- -UACCUCU---------------CGAGCU--ACUGCugCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 36802 0.7 0.878775
Target:  5'- -cGGAGccGCUCGcgGACGGCGGacuCGGg -3'
miRNA:   3'- uaCCUCu-CGAGCuaCUGCUGCUc--GCC- -5'
13972 3' -55.2 NC_003521.1 + 38240 0.69 0.91067
Target:  5'- -aGGAGAGCauugacgcCGGUgaucucagcggaGACGACGuAGCGGa -3'
miRNA:   3'- uaCCUCUCGa-------GCUA------------CUGCUGC-UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 38300 0.71 0.841719
Target:  5'- gGUGcGAGAGCUCGu---CGGCcAGCGGg -3'
miRNA:   3'- -UAC-CUCUCGAGCuacuGCUGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 39799 0.66 0.970587
Target:  5'- --uGAG-GCUCGGcggGGCGcCGGGCGGu -3'
miRNA:   3'- uacCUCuCGAGCUa--CUGCuGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 40670 0.72 0.782517
Target:  5'- -aGGAGGGCaaaCGAUGugGGCG-GCGu -3'
miRNA:   3'- uaCCUCUCGa--GCUACugCUGCuCGCc -5'
13972 3' -55.2 NC_003521.1 + 43593 0.68 0.937019
Target:  5'- -cGGGcGGCgaCGAgGACGACGAGCGc -3'
miRNA:   3'- uaCCUcUCGa-GCUaCUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 46339 0.66 0.978163
Target:  5'- -aGGAGGGCgcgUCGucgGACGA-GGGCGa -3'
miRNA:   3'- uaCCUCUCG---AGCua-CUGCUgCUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.