miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 3' -55.2 NC_003521.1 + 208270 1.09 0.005656
Target:  5'- cAUGGAGAGCUCGAUGACGACGAGCGGg -3'
miRNA:   3'- -UACCUCUCGAGCUACUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 100569 0.79 0.387557
Target:  5'- -aGGAGGGCaCGAggagGACGACGAcGCGGa -3'
miRNA:   3'- uaCCUCUCGaGCUa---CUGCUGCU-CGCC- -5'
13972 3' -55.2 NC_003521.1 + 186920 0.74 0.687865
Target:  5'- -aGGGGGGCgcCGGUGGCGG-GGGCGGc -3'
miRNA:   3'- uaCCUCUCGa-GCUACUGCUgCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 113379 0.73 0.717099
Target:  5'- -aGGAGGGUUaCGGcgGACGccGCGGGCGGg -3'
miRNA:   3'- uaCCUCUCGA-GCUa-CUGC--UGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 161223 0.73 0.726717
Target:  5'- -cGGcaAGUUCGAUGGCGGCGgcAGCGGc -3'
miRNA:   3'- uaCCucUCGAGCUACUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 216908 0.73 0.726717
Target:  5'- -aGGAGGGCgCGGUGGCaGCGgaGGCGGu -3'
miRNA:   3'- uaCCUCUCGaGCUACUGcUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 98624 0.73 0.726717
Target:  5'- -aGGAGGGCgagagCGgcGGCGGCGguAGCGGc -3'
miRNA:   3'- uaCCUCUCGa----GCuaCUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 186777 0.73 0.736259
Target:  5'- -cGGAGgcGGCggUGGUGGCGGCG-GCGGg -3'
miRNA:   3'- uaCCUC--UCGa-GCUACUGCUGCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 136091 0.73 0.745716
Target:  5'- cUGGAGGGCUCGGUGugcgucaaGACGGGacuGGu -3'
miRNA:   3'- uACCUCUCGAGCUACug------CUGCUCg--CC- -5'
13972 3' -55.2 NC_003521.1 + 169294 0.72 0.773487
Target:  5'- -cGGcGGGCUCGGUGACGuCGGcCGGc -3'
miRNA:   3'- uaCCuCUCGAGCUACUGCuGCUcGCC- -5'
13972 3' -55.2 NC_003521.1 + 348 0.72 0.782517
Target:  5'- -aGGAGGGCaaaCGAUGugGGCG-GCGu -3'
miRNA:   3'- uaCCUCUCGa--GCUACugCUGCuCGCc -5'
13972 3' -55.2 NC_003521.1 + 167438 0.72 0.782517
Target:  5'- gGUGGAuGAaCUCGGacaUGACGAUGAGCGu -3'
miRNA:   3'- -UACCU-CUcGAGCU---ACUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 40670 0.72 0.782517
Target:  5'- -aGGAGGGCaaaCGAUGugGGCG-GCGu -3'
miRNA:   3'- uaCCUCUCGa--GCUACugCUGCuCGCc -5'
13972 3' -55.2 NC_003521.1 + 76048 0.72 0.787874
Target:  5'- -cGGAGcgggccgccagacGCUUGAUGACGGCGAuguGCGGc -3'
miRNA:   3'- uaCCUCu------------CGAGCUACUGCUGCU---CGCC- -5'
13972 3' -55.2 NC_003521.1 + 213102 0.72 0.791419
Target:  5'- -aGGAGAcgcgGCUCGAcgcgcugggugUGGCGugGuGCGGc -3'
miRNA:   3'- uaCCUCU----CGAGCU-----------ACUGCugCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 47554 0.72 0.791419
Target:  5'- cAUGucGAGCgggGAaGACGGCGAGCGGg -3'
miRNA:   3'- -UACcuCUCGag-CUaCUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 187901 0.71 0.799316
Target:  5'- gGUGGAcaaucgcGAG-UCGAUGACGACGuGCGu -3'
miRNA:   3'- -UACCU-------CUCgAGCUACUGCUGCuCGCc -5'
13972 3' -55.2 NC_003521.1 + 121834 0.71 0.800187
Target:  5'- -aGGAGAGCUCaGAgGAgGAgGAGuCGGa -3'
miRNA:   3'- uaCCUCUCGAG-CUaCUgCUgCUC-GCC- -5'
13972 3' -55.2 NC_003521.1 + 89917 0.71 0.800187
Target:  5'- cGUGGaAGGGCgcgcagUCGAUGACGccgGCGuGCGGc -3'
miRNA:   3'- -UACC-UCUCG------AGCUACUGC---UGCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 192348 0.71 0.825596
Target:  5'- gAUGG-GuGCUCGGUGcuCGcACGGGCGGc -3'
miRNA:   3'- -UACCuCuCGAGCUACu-GC-UGCUCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.