Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13972 | 3' | -55.2 | NC_003521.1 | + | 208270 | 1.09 | 0.005656 |
Target: 5'- cAUGGAGAGCUCGAUGACGACGAGCGGg -3' miRNA: 3'- -UACCUCUCGAGCUACUGCUGCUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 100569 | 0.79 | 0.387557 |
Target: 5'- -aGGAGGGCaCGAggagGACGACGAcGCGGa -3' miRNA: 3'- uaCCUCUCGaGCUa---CUGCUGCU-CGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 186920 | 0.74 | 0.687865 |
Target: 5'- -aGGGGGGCgcCGGUGGCGG-GGGCGGc -3' miRNA: 3'- uaCCUCUCGa-GCUACUGCUgCUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 113379 | 0.73 | 0.717099 |
Target: 5'- -aGGAGGGUUaCGGcgGACGccGCGGGCGGg -3' miRNA: 3'- uaCCUCUCGA-GCUa-CUGC--UGCUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 98624 | 0.73 | 0.726717 |
Target: 5'- -aGGAGGGCgagagCGgcGGCGGCGguAGCGGc -3' miRNA: 3'- uaCCUCUCGa----GCuaCUGCUGC--UCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 161223 | 0.73 | 0.726717 |
Target: 5'- -cGGcaAGUUCGAUGGCGGCGgcAGCGGc -3' miRNA: 3'- uaCCucUCGAGCUACUGCUGC--UCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 216908 | 0.73 | 0.726717 |
Target: 5'- -aGGAGGGCgCGGUGGCaGCGgaGGCGGu -3' miRNA: 3'- uaCCUCUCGaGCUACUGcUGC--UCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 186777 | 0.73 | 0.736259 |
Target: 5'- -cGGAGgcGGCggUGGUGGCGGCG-GCGGg -3' miRNA: 3'- uaCCUC--UCGa-GCUACUGCUGCuCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 136091 | 0.73 | 0.745716 |
Target: 5'- cUGGAGGGCUCGGUGugcgucaaGACGGGacuGGu -3' miRNA: 3'- uACCUCUCGAGCUACug------CUGCUCg--CC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 169294 | 0.72 | 0.773487 |
Target: 5'- -cGGcGGGCUCGGUGACGuCGGcCGGc -3' miRNA: 3'- uaCCuCUCGAGCUACUGCuGCUcGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 167438 | 0.72 | 0.782517 |
Target: 5'- gGUGGAuGAaCUCGGacaUGACGAUGAGCGu -3' miRNA: 3'- -UACCU-CUcGAGCU---ACUGCUGCUCGCc -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 40670 | 0.72 | 0.782517 |
Target: 5'- -aGGAGGGCaaaCGAUGugGGCG-GCGu -3' miRNA: 3'- uaCCUCUCGa--GCUACugCUGCuCGCc -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 348 | 0.72 | 0.782517 |
Target: 5'- -aGGAGGGCaaaCGAUGugGGCG-GCGu -3' miRNA: 3'- uaCCUCUCGa--GCUACugCUGCuCGCc -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 76048 | 0.72 | 0.787874 |
Target: 5'- -cGGAGcgggccgccagacGCUUGAUGACGGCGAuguGCGGc -3' miRNA: 3'- uaCCUCu------------CGAGCUACUGCUGCU---CGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 47554 | 0.72 | 0.791419 |
Target: 5'- cAUGucGAGCgggGAaGACGGCGAGCGGg -3' miRNA: 3'- -UACcuCUCGag-CUaCUGCUGCUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 213102 | 0.72 | 0.791419 |
Target: 5'- -aGGAGAcgcgGCUCGAcgcgcugggugUGGCGugGuGCGGc -3' miRNA: 3'- uaCCUCU----CGAGCU-----------ACUGCugCuCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 187901 | 0.71 | 0.799316 |
Target: 5'- gGUGGAcaaucgcGAG-UCGAUGACGACGuGCGu -3' miRNA: 3'- -UACCU-------CUCgAGCUACUGCUGCuCGCc -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 89917 | 0.71 | 0.800187 |
Target: 5'- cGUGGaAGGGCgcgcagUCGAUGACGccgGCGuGCGGc -3' miRNA: 3'- -UACC-UCUCG------AGCUACUGC---UGCuCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 121834 | 0.71 | 0.800187 |
Target: 5'- -aGGAGAGCUCaGAgGAgGAgGAGuCGGa -3' miRNA: 3'- uaCCUCUCGAG-CUaCUgCUgCUC-GCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 192348 | 0.71 | 0.825596 |
Target: 5'- gAUGG-GuGCUCGGUGcuCGcACGGGCGGc -3' miRNA: 3'- -UACCuCuCGAGCUACu-GC-UGCUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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