miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 3' -55.2 NC_003521.1 + 222805 0.68 0.926639
Target:  5'- cGUGGuAGcgcGGCUCGGUGguggaaaACGGCGucuGCGGg -3'
miRNA:   3'- -UACC-UC---UCGAGCUAC-------UGCUGCu--CGCC- -5'
13972 3' -55.2 NC_003521.1 + 150553 0.69 0.892181
Target:  5'- gGUGGuGGuGCgggUGGUGGCGGCG-GCGGc -3'
miRNA:   3'- -UACCuCU-CGa--GCUACUGCUGCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 33084 0.69 0.898564
Target:  5'- gAUGGccuucugcacGGGCUccagccagcCGAUGACGGCGuAGCGGg -3'
miRNA:   3'- -UACCu---------CUCGA---------GCUACUGCUGC-UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 99188 0.69 0.898564
Target:  5'- cUGG-GGGCUgaaGGUGGCGGCGgaggauacGGCGGg -3'
miRNA:   3'- uACCuCUCGAg--CUACUGCUGC--------UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 213182 0.69 0.898564
Target:  5'- -aGGuuGGGGCUCag-GACGAUGAGCGu -3'
miRNA:   3'- uaCC--UCUCGAGcuaCUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 80271 0.69 0.898564
Target:  5'- -cGGAGcuuGGUUCGAaGACGACGGcGCGu -3'
miRNA:   3'- uaCCUC---UCGAGCUaCUGCUGCU-CGCc -5'
13972 3' -55.2 NC_003521.1 + 204273 0.69 0.89919
Target:  5'- cUGGAGAcggcGCUCGAcaugaccggcaugccGACGACcGGCGGg -3'
miRNA:   3'- uACCUCU----CGAGCUa--------------CUGCUGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 38240 0.69 0.91067
Target:  5'- -aGGAGAGCauugacgcCGGUgaucucagcggaGACGACGuAGCGGa -3'
miRNA:   3'- uaCCUCUCGa-------GCUA------------CUGCUGC-UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 181881 0.69 0.91639
Target:  5'- -cGGcGAGCUCGccGAUGACGuucGUGGu -3'
miRNA:   3'- uaCCuCUCGAGCuaCUGCUGCu--CGCC- -5'
13972 3' -55.2 NC_003521.1 + 19041 0.7 0.878775
Target:  5'- -cGGAcgcugGAGCuUCGAgGACGGCGGcGCGGc -3'
miRNA:   3'- uaCCU-----CUCG-AGCUaCUGCUGCU-CGCC- -5'
13972 3' -55.2 NC_003521.1 + 149703 0.7 0.867451
Target:  5'- gGUGGAGcccugugagcucucGCUCGGcgugcccGACGACGAGUGGc -3'
miRNA:   3'- -UACCUCu-------------CGAGCUa------CUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 207439 0.7 0.864539
Target:  5'- -gGGAGAGCggCGGcUGGCGGCGuGUGu -3'
miRNA:   3'- uaCCUCUCGa-GCU-ACUGCUGCuCGCc -5'
13972 3' -55.2 NC_003521.1 + 136091 0.73 0.745716
Target:  5'- cUGGAGGGCUCGGUGugcgucaaGACGGGacuGGu -3'
miRNA:   3'- uACCUCUCGAGCUACug------CUGCUCg--CC- -5'
13972 3' -55.2 NC_003521.1 + 348 0.72 0.782517
Target:  5'- -aGGAGGGCaaaCGAUGugGGCG-GCGu -3'
miRNA:   3'- uaCCUCUCGa--GCUACugCUGCuCGCc -5'
13972 3' -55.2 NC_003521.1 + 76048 0.72 0.787874
Target:  5'- -cGGAGcgggccgccagacGCUUGAUGACGGCGAuguGCGGc -3'
miRNA:   3'- uaCCUCu------------CGAGCUACUGCUGCU---CGCC- -5'
13972 3' -55.2 NC_003521.1 + 213102 0.72 0.791419
Target:  5'- -aGGAGAcgcgGCUCGAcgcgcugggugUGGCGugGuGCGGc -3'
miRNA:   3'- uaCCUCU----CGAGCU-----------ACUGCugCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 47554 0.72 0.791419
Target:  5'- cAUGucGAGCgggGAaGACGGCGAGCGGg -3'
miRNA:   3'- -UACcuCUCGag-CUaCUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 192348 0.71 0.825596
Target:  5'- gAUGG-GuGCUCGGUGcuCGcACGGGCGGc -3'
miRNA:   3'- -UACCuCuCGAGCUACu-GC-UGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 238527 0.71 0.841719
Target:  5'- gGUGcGAGAGCUCGu---CGGCcAGCGGg -3'
miRNA:   3'- -UAC-CUCUCGAGCuacuGCUGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 166229 0.7 0.864539
Target:  5'- cUGGuagaAGAGCgUGAUGccgccCGGCGAGCGGg -3'
miRNA:   3'- uACC----UCUCGaGCUACu----GCUGCUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.