miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 3' -55.2 NC_003521.1 + 208270 1.09 0.005656
Target:  5'- cAUGGAGAGCUCGAUGACGACGAGCGGg -3'
miRNA:   3'- -UACCUCUCGAGCUACUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 113851 0.7 0.857122
Target:  5'- -cGGGGcGGC-CGgcGACGACGGcGCGGg -3'
miRNA:   3'- uaCCUC-UCGaGCuaCUGCUGCU-CGCC- -5'
13972 3' -55.2 NC_003521.1 + 36802 0.7 0.878775
Target:  5'- -cGGAGccGCUCGcgGACGGCGGacuCGGg -3'
miRNA:   3'- uaCCUCu-CGAGCuaCUGCUGCUc--GCC- -5'
13972 3' -55.2 NC_003521.1 + 69746 0.66 0.979052
Target:  5'- -cGGGGAgGCggCGGUGGCacaagugcaugaucgGACGGGCGa -3'
miRNA:   3'- uaCCUCU-CGa-GCUACUG---------------CUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 161223 0.73 0.726717
Target:  5'- -cGGcaAGUUCGAUGGCGGCGgcAGCGGc -3'
miRNA:   3'- uaCCucUCGAGCUACUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 216908 0.73 0.726717
Target:  5'- -aGGAGGGCgCGGUGGCaGCGgaGGCGGu -3'
miRNA:   3'- uaCCUCUCGaGCUACUGcUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 169294 0.72 0.773487
Target:  5'- -cGGcGGGCUCGGUGACGuCGGcCGGc -3'
miRNA:   3'- uaCCuCUCGAGCUACUGCuGCUcGCC- -5'
13972 3' -55.2 NC_003521.1 + 40670 0.72 0.782517
Target:  5'- -aGGAGGGCaaaCGAUGugGGCG-GCGu -3'
miRNA:   3'- uaCCUCUCGa--GCUACugCUGCuCGCc -5'
13972 3' -55.2 NC_003521.1 + 89917 0.71 0.800187
Target:  5'- cGUGGaAGGGCgcgcagUCGAUGACGccgGCGuGCGGc -3'
miRNA:   3'- -UACC-UCUCG------AGCUACUGC---UGCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 110675 0.7 0.849514
Target:  5'- -gGGcguAGcGCUCGGUGGCGGC-AGCGGc -3'
miRNA:   3'- uaCC---UCuCGAGCUACUGCUGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 36334 0.71 0.836955
Target:  5'- cGUGGGGAcaugcgacuuuagggGCUCGGgcUGGCGugGcGCGGc -3'
miRNA:   3'- -UACCUCU---------------CGAGCU--ACUGCugCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 187901 0.71 0.799316
Target:  5'- gGUGGAcaaucgcGAG-UCGAUGACGACGuGCGu -3'
miRNA:   3'- -UACCU-------CUCgAGCUACUGCUGCuCGCc -5'
13972 3' -55.2 NC_003521.1 + 100569 0.79 0.387557
Target:  5'- -aGGAGGGCaCGAggagGACGACGAcGCGGa -3'
miRNA:   3'- uaCCUCUCGaGCUa---CUGCUGCU-CGCC- -5'
13972 3' -55.2 NC_003521.1 + 80951 0.71 0.841719
Target:  5'- -aGGAG-GC-CGAUGACGACGAugaGGa -3'
miRNA:   3'- uaCCUCuCGaGCUACUGCUGCUcg-CC- -5'
13972 3' -55.2 NC_003521.1 + 186920 0.74 0.687865
Target:  5'- -aGGGGGGCgcCGGUGGCGG-GGGCGGc -3'
miRNA:   3'- uaCCUCUCGa-GCUACUGCUgCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 167438 0.72 0.782517
Target:  5'- gGUGGAuGAaCUCGGacaUGACGAUGAGCGu -3'
miRNA:   3'- -UACCU-CUcGAGCU---ACUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 38300 0.71 0.841719
Target:  5'- gGUGcGAGAGCUCGu---CGGCcAGCGGg -3'
miRNA:   3'- -UAC-CUCUCGAGCuacuGCUGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 162223 0.7 0.871758
Target:  5'- -cGGGGGGUgguagCGccGACGGCGcuGGCGGg -3'
miRNA:   3'- uaCCUCUCGa----GCuaCUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 98624 0.73 0.726717
Target:  5'- -aGGAGGGCgagagCGgcGGCGGCGguAGCGGc -3'
miRNA:   3'- uaCCUCUCGa----GCuaCUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 186777 0.73 0.736259
Target:  5'- -cGGAGgcGGCggUGGUGGCGGCG-GCGGg -3'
miRNA:   3'- uaCCUC--UCGa-GCUACUGCUGCuCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.