miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 3' -55.2 NC_003521.1 + 36334 0.71 0.836955
Target:  5'- cGUGGGGAcaugcgacuuuagggGCUCGGgcUGGCGugGcGCGGc -3'
miRNA:   3'- -UACCUCU---------------CGAGCU--ACUGCugCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 80951 0.71 0.841719
Target:  5'- -aGGAG-GC-CGAUGACGACGAugaGGa -3'
miRNA:   3'- uaCCUCuCGaGCUACUGCUGCUcg-CC- -5'
13972 3' -55.2 NC_003521.1 + 238527 0.71 0.841719
Target:  5'- gGUGcGAGAGCUCGu---CGGCcAGCGGg -3'
miRNA:   3'- -UAC-CUCUCGAGCuacuGCUGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 38300 0.71 0.841719
Target:  5'- gGUGcGAGAGCUCGu---CGGCcAGCGGg -3'
miRNA:   3'- -UAC-CUCUCGAGCuacuGCUGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 110675 0.7 0.849514
Target:  5'- -gGGcguAGcGCUCGGUGGCGGC-AGCGGc -3'
miRNA:   3'- uaCC---UCuCGAGCUACUGCUGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 113851 0.7 0.857122
Target:  5'- -cGGGGcGGC-CGgcGACGACGGcGCGGg -3'
miRNA:   3'- uaCCUC-UCGaGCuaCUGCUGCU-CGCC- -5'
13972 3' -55.2 NC_003521.1 + 207439 0.7 0.864539
Target:  5'- -gGGAGAGCggCGGcUGGCGGCGuGUGu -3'
miRNA:   3'- uaCCUCUCGa-GCU-ACUGCUGCuCGCc -5'
13972 3' -55.2 NC_003521.1 + 166229 0.7 0.864539
Target:  5'- cUGGuagaAGAGCgUGAUGccgccCGGCGAGCGGg -3'
miRNA:   3'- uACC----UCUCGaGCUACu----GCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 149703 0.7 0.867451
Target:  5'- gGUGGAGcccugugagcucucGCUCGGcgugcccGACGACGAGUGGc -3'
miRNA:   3'- -UACCUCu-------------CGAGCUa------CUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 162223 0.7 0.871758
Target:  5'- -cGGGGGGUgguagCGccGACGGCGcuGGCGGg -3'
miRNA:   3'- uaCCUCUCGa----GCuaCUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 36802 0.7 0.878775
Target:  5'- -cGGAGccGCUCGcgGACGGCGGacuCGGg -3'
miRNA:   3'- uaCCUCu-CGAGCuaCUGCUGCUc--GCC- -5'
13972 3' -55.2 NC_003521.1 + 19041 0.7 0.878775
Target:  5'- -cGGAcgcugGAGCuUCGAgGACGGCGGcGCGGc -3'
miRNA:   3'- uaCCU-----CUCG-AGCUaCUGCUGCU-CGCC- -5'
13972 3' -55.2 NC_003521.1 + 125705 0.69 0.892181
Target:  5'- aGUGGAGAcGCcggCGGUcACGACGggGGCGGc -3'
miRNA:   3'- -UACCUCU-CGa--GCUAcUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 150553 0.69 0.892181
Target:  5'- gGUGGuGGuGCgggUGGUGGCGGCG-GCGGc -3'
miRNA:   3'- -UACCuCU-CGa--GCUACUGCUGCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 103649 0.69 0.898564
Target:  5'- -gGGGGcAGCUCGgcGGCGGCcgcuGCGGc -3'
miRNA:   3'- uaCCUC-UCGAGCuaCUGCUGcu--CGCC- -5'
13972 3' -55.2 NC_003521.1 + 153391 0.69 0.898564
Target:  5'- gGUGGGGGGCUgGAUGggaaagGCGACGAuccccuggGCGu -3'
miRNA:   3'- -UACCUCUCGAgCUAC------UGCUGCU--------CGCc -5'
13972 3' -55.2 NC_003521.1 + 80271 0.69 0.898564
Target:  5'- -cGGAGcuuGGUUCGAaGACGACGGcGCGu -3'
miRNA:   3'- uaCCUC---UCGAGCUaCUGCUGCU-CGCc -5'
13972 3' -55.2 NC_003521.1 + 213182 0.69 0.898564
Target:  5'- -aGGuuGGGGCUCag-GACGAUGAGCGu -3'
miRNA:   3'- uaCC--UCUCGAGcuaCUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 99188 0.69 0.898564
Target:  5'- cUGG-GGGCUgaaGGUGGCGGCGgaggauacGGCGGg -3'
miRNA:   3'- uACCuCUCGAg--CUACUGCUGC--------UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 33084 0.69 0.898564
Target:  5'- gAUGGccuucugcacGGGCUccagccagcCGAUGACGGCGuAGCGGg -3'
miRNA:   3'- -UACCu---------CUCGA---------GCUACUGCUGC-UCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.