miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 3' -55.2 NC_003521.1 + 240026 0.66 0.970587
Target:  5'- --uGAG-GCUCGGcggGGCGcCGGGCGGu -3'
miRNA:   3'- uacCUCuCGAGCUa--CUGCuGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 238527 0.71 0.841719
Target:  5'- gGUGcGAGAGCUCGu---CGGCcAGCGGg -3'
miRNA:   3'- -UAC-CUCUCGAGCuacuGCUGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 230969 0.67 0.96459
Target:  5'- -cGG-GAGCUCGAagggugcuaucaUGACG-CcAGCGGg -3'
miRNA:   3'- uaCCuCUCGAGCU------------ACUGCuGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 222805 0.68 0.926639
Target:  5'- cGUGGuAGcgcGGCUCGGUGguggaaaACGGCGucuGCGGg -3'
miRNA:   3'- -UACC-UC---UCGAGCUAC-------UGCUGCu--CGCC- -5'
13972 3' -55.2 NC_003521.1 + 218710 0.67 0.954068
Target:  5'- -aGGAGAcggCGgcGGCGGCGGGCGa -3'
miRNA:   3'- uaCCUCUcgaGCuaCUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 216908 0.73 0.726717
Target:  5'- -aGGAGGGCgCGGUGGCaGCGgaGGCGGu -3'
miRNA:   3'- uaCCUCUCGaGCUACUGcUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 213182 0.69 0.898564
Target:  5'- -aGGuuGGGGCUCag-GACGAUGAGCGu -3'
miRNA:   3'- uaCC--UCUCGAGcuaCUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 213102 0.72 0.791419
Target:  5'- -aGGAGAcgcgGCUCGAcgcgcugggugUGGCGugGuGCGGc -3'
miRNA:   3'- uaCCUCU----CGAGCU-----------ACUGCugCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 212364 0.66 0.978163
Target:  5'- cUGGuGcaccgcccaaGGCUgGAUGGCGACGAagagccacagcaGCGGu -3'
miRNA:   3'- uACCuC----------UCGAgCUACUGCUGCU------------CGCC- -5'
13972 3' -55.2 NC_003521.1 + 210531 0.67 0.961291
Target:  5'- cUGaAGAGCuacuUCGAcGACGugGAGCGc -3'
miRNA:   3'- uACcUCUCG----AGCUaCUGCugCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 208270 1.09 0.005656
Target:  5'- cAUGGAGAGCUCGAUGACGACGAGCGGg -3'
miRNA:   3'- -UACCUCUCGAGCUACUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 207677 0.67 0.945985
Target:  5'- -cGcGAGGGa--GAUGACGGCGAGCc- -3'
miRNA:   3'- uaC-CUCUCgagCUACUGCUGCUCGcc -5'
13972 3' -55.2 NC_003521.1 + 207439 0.7 0.864539
Target:  5'- -gGGAGAGCggCGGcUGGCGGCGuGUGu -3'
miRNA:   3'- uaCCUCUCGa-GCU-ACUGCUGCuCGCc -5'
13972 3' -55.2 NC_003521.1 + 206463 0.67 0.954068
Target:  5'- -gGGGGAuuGCcccaUCGGUGGCGucaACGAGCGa -3'
miRNA:   3'- uaCCUCU--CG----AGCUACUGC---UGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 204465 0.68 0.941613
Target:  5'- -aGGuAGuGCUCGuaggccgucagGUGAUagGACGAGCGGu -3'
miRNA:   3'- uaCC-UCuCGAGC-----------UACUG--CUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 204273 0.69 0.89919
Target:  5'- cUGGAGAcggcGCUCGAcaugaccggcaugccGACGACcGGCGGg -3'
miRNA:   3'- uACCUCU----CGAGCUa--------------CUGCUGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 197561 0.66 0.970587
Target:  5'- -aGGuaguGAcGCagGAUGGCGAUGAGgCGGa -3'
miRNA:   3'- uaCCu---CU-CGagCUACUGCUGCUC-GCC- -5'
13972 3' -55.2 NC_003521.1 + 197285 0.66 0.975575
Target:  5'- -cGGGGAGCggGAgGGCGGCucgacgggagaggGGGCGGc -3'
miRNA:   3'- uaCCUCUCGagCUaCUGCUG-------------CUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 192348 0.71 0.825596
Target:  5'- gAUGG-GuGCUCGGUGcuCGcACGGGCGGc -3'
miRNA:   3'- -UACCuCuCGAGCUACu-GC-UGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 187901 0.71 0.799316
Target:  5'- gGUGGAcaaucgcGAG-UCGAUGACGACGuGCGu -3'
miRNA:   3'- -UACCU-------CUCgAGCUACUGCUGCuCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.