Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13972 | 5' | -55.4 | NC_003521.1 | + | 60609 | 0.71 | 0.792236 |
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Target: 5'- --aCGCgcggCACCACCaacgccgagcGCGAGUACCUGu -3' miRNA: 3'- uagGCGa---GUGGUGGa---------UGCUCAUGGAC- -5' |
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| 13972 | 5' | -55.4 | NC_003521.1 | + | 72337 | 0.71 | 0.764871 |
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Target: 5'- cUCCGuCUCGCCGCCcAUGAucgACCUGa -3' miRNA: 3'- uAGGC-GAGUGGUGGaUGCUca-UGGAC- -5' |
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| 13972 | 5' | -55.4 | NC_003521.1 | + | 16396 | 0.72 | 0.746045 |
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Target: 5'- -aCCGCUCGcCCACC-ACGcAGcGCCUGg -3' miRNA: 3'- uaGGCGAGU-GGUGGaUGC-UCaUGGAC- -5' |
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| 13972 | 5' | -55.4 | NC_003521.1 | + | 223822 | 0.72 | 0.736483 |
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Target: 5'- -gCCGC-CGCCACC-GCGGGcGCCUGc -3' miRNA: 3'- uaGGCGaGUGGUGGaUGCUCaUGGAC- -5' |
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| 13972 | 5' | -55.4 | NC_003521.1 | + | 78493 | 0.74 | 0.647519 |
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Target: 5'- -cCCGCagUCGCCGCCUGCGGGUAgUa- -3' miRNA: 3'- uaGGCG--AGUGGUGGAUGCUCAUgGac -5' |
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| 13972 | 5' | -55.4 | NC_003521.1 | + | 36350 | 0.75 | 0.577321 |
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Target: 5'- cGUCCuaUCACCugacgGCCUACGAGcacUACCUGa -3' miRNA: 3'- -UAGGcgAGUGG-----UGGAUGCUC---AUGGAC- -5' |
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| 13972 | 5' | -55.4 | NC_003521.1 | + | 208306 | 1.07 | 0.006261 |
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Target: 5'- gAUCCGCUCACCACCUACGAGUACCUGg -3' miRNA: 3'- -UAGGCGAGUGGUGGAUGCUCAUGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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