miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 5' -55.4 NC_003521.1 + 138525 0.68 0.923486
Target:  5'- -gCCGCgga-CGCCUacuacgacggggACGAGUACCUGa -3'
miRNA:   3'- uaGGCGagugGUGGA------------UGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 143454 0.67 0.933777
Target:  5'- -gCCGCUCgACCGCCaGCGcGUGCUc- -3'
miRNA:   3'- uaGGCGAG-UGGUGGaUGCuCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 143532 0.66 0.955504
Target:  5'- gAUCCGCacgcgCGCCGCCggcgACGAGcagcaGCCg- -3'
miRNA:   3'- -UAGGCGa----GUGGUGGa---UGCUCa----UGGac -5'
13972 5' -55.4 NC_003521.1 + 144121 0.69 0.887122
Target:  5'- -aCCGC-CGCgGCCUggACGAGgugcGCCUGg -3'
miRNA:   3'- uaGGCGaGUGgUGGA--UGCUCa---UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 144469 0.68 0.900145
Target:  5'- uUCgGCgCGCCaccaccauaACCUGCGAGgaggACCUGg -3'
miRNA:   3'- uAGgCGaGUGG---------UGGAUGCUCa---UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 145091 0.66 0.951608
Target:  5'- -gUgGCUCAgCCGCCUGCuGG-ACCUGg -3'
miRNA:   3'- uaGgCGAGU-GGUGGAUGcUCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 148869 0.68 0.893744
Target:  5'- uUCCGCccUCGCCGCC-ACGGGguccGCCg- -3'
miRNA:   3'- uAGGCG--AGUGGUGGaUGCUCa---UGGac -5'
13972 5' -55.4 NC_003521.1 + 162554 0.66 0.962644
Target:  5'- cAUCC--UCACgCGCCU-CGAGUACCUc -3'
miRNA:   3'- -UAGGcgAGUG-GUGGAuGCUCAUGGAc -5'
13972 5' -55.4 NC_003521.1 + 163027 0.68 0.912273
Target:  5'- gAUCCGCaucuacaccUCGCUGCUUgACGAGUgcGCCUGc -3'
miRNA:   3'- -UAGGCG---------AGUGGUGGA-UGCUCA--UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 163422 0.67 0.943147
Target:  5'- cGUCgGCUgcCGCUGCCUACcaGGGUGCCa- -3'
miRNA:   3'- -UAGgCGA--GUGGUGGAUG--CUCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 170686 0.69 0.887122
Target:  5'- --gCGCUCGCCGCagcuCGAGgcCCUGa -3'
miRNA:   3'- uagGCGAGUGGUGgau-GCUCauGGAC- -5'
13972 5' -55.4 NC_003521.1 + 174462 0.66 0.965897
Target:  5'- -gCUGCUCGCCGCCggccACGcgagcgggauccAGUugCUGc -3'
miRNA:   3'- uaGGCGAGUGGUGGa---UGC------------UCAugGAC- -5'
13972 5' -55.4 NC_003521.1 + 175690 0.66 0.965897
Target:  5'- gGUCCGCUugCGCCAUCUGuCG-GUACUc- -3'
miRNA:   3'- -UAGGCGA--GUGGUGGAU-GCuCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 181821 0.68 0.921863
Target:  5'- uAUCgGUUCGCUACCUcuaccacgccgaccACcAGUGCCUGa -3'
miRNA:   3'- -UAGgCGAGUGGUGGA--------------UGcUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 183764 0.7 0.818347
Target:  5'- gAUCUG-UCGCCAgCUacacgggcaggACGAGUGCCUGg -3'
miRNA:   3'- -UAGGCgAGUGGUgGA-----------UGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 185261 0.68 0.893744
Target:  5'- uGUCCGCUCA--ACC-GCGAGUGCUa- -3'
miRNA:   3'- -UAGGCGAGUggUGGaUGCUCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 187643 0.67 0.943147
Target:  5'- -gCCGCUgGCCAUCUucaucgGCGAGggcgGCCg- -3'
miRNA:   3'- uaGGCGAgUGGUGGA------UGCUCa---UGGac -5'
13972 5' -55.4 NC_003521.1 + 188502 0.67 0.938577
Target:  5'- gGUCCGC-CGCCGagaUACGAGgagGCCg- -3'
miRNA:   3'- -UAGGCGaGUGGUgg-AUGCUCa--UGGac -5'
13972 5' -55.4 NC_003521.1 + 191127 0.71 0.80109
Target:  5'- uAUCUGCg-ACCcgACCUACGAGUuCCUGa -3'
miRNA:   3'- -UAGGCGagUGG--UGGAUGCUCAuGGAC- -5'
13972 5' -55.4 NC_003521.1 + 194270 0.67 0.933777
Target:  5'- -aCCGCuUCAgCACCcggcGCGAGgcCCUGg -3'
miRNA:   3'- uaGGCG-AGUgGUGGa---UGCUCauGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.