miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 5' -55.4 NC_003521.1 + 73977 0.66 0.949988
Target:  5'- -gCCGCgcCACCGCCUGCGuauccucaccgucGUcGCCUGg -3'
miRNA:   3'- uaGGCGa-GUGGUGGAUGCu------------CA-UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 75328 0.67 0.94749
Target:  5'- -gCCGaggCGCagAgCUGCGAGUACCUGa -3'
miRNA:   3'- uaGGCga-GUGg-UgGAUGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 76268 0.66 0.968945
Target:  5'- --gCGCacgGCCGCCUGCGAG-ACCUc -3'
miRNA:   3'- uagGCGag-UGGUGGAUGCUCaUGGAc -5'
13972 5' -55.4 NC_003521.1 + 78493 0.74 0.647519
Target:  5'- -cCCGCagUCGCCGCCUGCGGGUAgUa- -3'
miRNA:   3'- uaGGCG--AGUGGUGGAUGCUCAUgGac -5'
13972 5' -55.4 NC_003521.1 + 111498 0.67 0.94749
Target:  5'- --gCGCUCaACCGCCUGCuGGGcgACCUc -3'
miRNA:   3'- uagGCGAG-UGGUGGAUG-CUCa-UGGAc -5'
13972 5' -55.4 NC_003521.1 + 112786 0.7 0.83495
Target:  5'- -cCUGCUgGCCGCCUACGGGcacgcGCuCUGg -3'
miRNA:   3'- uaGGCGAgUGGUGGAUGCUCa----UG-GAC- -5'
13972 5' -55.4 NC_003521.1 + 112899 0.68 0.912273
Target:  5'- -gCCGCgagaUCGCCGCCUGgGAGgGCCc- -3'
miRNA:   3'- uaGGCG----AGUGGUGGAUgCUCaUGGac -5'
13972 5' -55.4 NC_003521.1 + 114265 0.68 0.893744
Target:  5'- -cCCGCUgccCACgGCCUucgcgcACGAGUACCa- -3'
miRNA:   3'- uaGGCGA---GUGgUGGA------UGCUCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 115176 0.7 0.818347
Target:  5'- -gCUGUUCaagACCAUCgACGAGUACCUGc -3'
miRNA:   3'- uaGGCGAG---UGGUGGaUGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 119875 0.67 0.949164
Target:  5'- gGUCCGCagucgguucuccucgUCGCC-CC-GCGGGUggGCCUGg -3'
miRNA:   3'- -UAGGCG---------------AGUGGuGGaUGCUCA--UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 120042 0.68 0.893744
Target:  5'- gGUCgCGCUCGcCCACC-GCGcAGUGCCc- -3'
miRNA:   3'- -UAG-GCGAGU-GGUGGaUGC-UCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 121618 0.69 0.87323
Target:  5'- --gCGCUCACCACCUgGCGcAGcGCCa- -3'
miRNA:   3'- uagGCGAGUGGUGGA-UGC-UCaUGGac -5'
13972 5' -55.4 NC_003521.1 + 121813 0.66 0.968945
Target:  5'- aAUCCGUguUCGCCGCCUuCGAGgagAgCUc -3'
miRNA:   3'- -UAGGCG--AGUGGUGGAuGCUCa--UgGAc -5'
13972 5' -55.4 NC_003521.1 + 129915 0.66 0.955504
Target:  5'- -gCCGCgCGCCugCUGCGcGaacACCUGg -3'
miRNA:   3'- uaGGCGaGUGGugGAUGCuCa--UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 131498 0.67 0.933777
Target:  5'- uGUCCGaacaCACCAgCUACGugacgggcgagaAGUACCUGc -3'
miRNA:   3'- -UAGGCga--GUGGUgGAUGC------------UCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 132323 0.66 0.965897
Target:  5'- -cCCGCgug-CGCCUGCGGGUGCUa- -3'
miRNA:   3'- uaGGCGagugGUGGAUGCUCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 132540 0.66 0.959181
Target:  5'- -aCCGC-CACCACCgcccuCG-GUGCCg- -3'
miRNA:   3'- uaGGCGaGUGGUGGau---GCuCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 134943 0.66 0.951608
Target:  5'- -gCCGuCUUGCgCACCUGCGAGUugaGgCUGa -3'
miRNA:   3'- uaGGC-GAGUG-GUGGAUGCUCA---UgGAC- -5'
13972 5' -55.4 NC_003521.1 + 136152 0.67 0.938577
Target:  5'- -gCCGC-CACCACCUGCuGGaGCCc- -3'
miRNA:   3'- uaGGCGaGUGGUGGAUGcUCaUGGac -5'
13972 5' -55.4 NC_003521.1 + 137631 0.69 0.880282
Target:  5'- -aCCGCUCGCgCAUCgcgguCGAGUACgUGc -3'
miRNA:   3'- uaGGCGAGUG-GUGGau---GCUCAUGgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.