miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 5' -55.4 NC_003521.1 + 1155 0.66 0.962644
Target:  5'- cGUCCccgggaGCcacggCGCCGCCUACGGGacuggacgGCCUGu -3'
miRNA:   3'- -UAGG------CGa----GUGGUGGAUGCUCa-------UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 9216 0.66 0.968945
Target:  5'- -aCCaGC-CACCACCUugGAG-AUUUGg -3'
miRNA:   3'- uaGG-CGaGUGGUGGAugCUCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 11776 0.66 0.965897
Target:  5'- -aCgGCUCAUCugCUGCGAGgagucCCUc -3'
miRNA:   3'- uaGgCGAGUGGugGAUGCUCau---GGAc -5'
13972 5' -55.4 NC_003521.1 + 13197 0.66 0.959181
Target:  5'- -gCCGCUCggGCCGCCgugUugGAGgGCCg- -3'
miRNA:   3'- uaGGCGAG--UGGUGG---AugCUCaUGGac -5'
13972 5' -55.4 NC_003521.1 + 14324 0.66 0.959181
Target:  5'- uAUUCGCgCAUCuacGCCUACGAcacccgcgaccaGUACCUGg -3'
miRNA:   3'- -UAGGCGaGUGG---UGGAUGCU------------CAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 15121 0.66 0.955504
Target:  5'- gAUCCGCaCGagggCGCCUGgGAGcGCCUGg -3'
miRNA:   3'- -UAGGCGaGUg---GUGGAUgCUCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 16396 0.72 0.746045
Target:  5'- -aCCGCUCGcCCACC-ACGcAGcGCCUGg -3'
miRNA:   3'- uaGGCGAGU-GGUGGaUGC-UCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 18466 0.66 0.962644
Target:  5'- -aCCGCgggCugCGCg-GCGAGUgucGCCUGg -3'
miRNA:   3'- uaGGCGa--GugGUGgaUGCUCA---UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 20681 0.66 0.962644
Target:  5'- -gCUGUUCAUCACCUucACGG--GCCUGg -3'
miRNA:   3'- uaGGCGAGUGGUGGA--UGCUcaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 21551 0.66 0.965897
Target:  5'- -cCCGCUCauguGCCAgccCCUGCGGGc-CCUGc -3'
miRNA:   3'- uaGGCGAG----UGGU---GGAUGCUCauGGAC- -5'
13972 5' -55.4 NC_003521.1 + 22201 0.68 0.917433
Target:  5'- -gCCGCUUACCGCCgcgcgcugGCGGccgaaccGUACCUc -3'
miRNA:   3'- uaGGCGAGUGGUGGa-------UGCU-------CAUGGAc -5'
13972 5' -55.4 NC_003521.1 + 23431 0.68 0.922947
Target:  5'- -gCCGCUCAgCCuggcgguGCCcACGGuGUGCCUGg -3'
miRNA:   3'- uaGGCGAGU-GG-------UGGaUGCU-CAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 29197 0.7 0.850842
Target:  5'- -gCC-CUCGCUGCgCaACGAGUACCUGg -3'
miRNA:   3'- uaGGcGAGUGGUG-GaUGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 36350 0.75 0.577321
Target:  5'- cGUCCuaUCACCugacgGCCUACGAGcacUACCUGa -3'
miRNA:   3'- -UAGGcgAGUGG-----UGGAUGCUC---AUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 43255 0.71 0.792236
Target:  5'- cAUCCGCcucaUCGCCAuCCUGCGucacUACCUGc -3'
miRNA:   3'- -UAGGCG----AGUGGU-GGAUGCuc--AUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 44067 0.67 0.94749
Target:  5'- gAUCCGCaacCcCUACCUGCGGGUcaaGCCg- -3'
miRNA:   3'- -UAGGCGa--GuGGUGGAUGCUCA---UGGac -5'
13972 5' -55.4 NC_003521.1 + 60609 0.71 0.792236
Target:  5'- --aCGCgcggCACCACCaacgccgagcGCGAGUACCUGu -3'
miRNA:   3'- uagGCGa---GUGGUGGa---------UGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 62581 0.66 0.968945
Target:  5'- --aCGC-CGCCGCCUACcAGUGCgaGa -3'
miRNA:   3'- uagGCGaGUGGUGGAUGcUCAUGgaC- -5'
13972 5' -55.4 NC_003521.1 + 72337 0.71 0.764871
Target:  5'- cUCCGuCUCGCCGCCcAUGAucgACCUGa -3'
miRNA:   3'- uAGGC-GAGUGGUGGaUGCUca-UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 73672 0.66 0.962644
Target:  5'- --aCGCcaucaacaUCAgCACCUGCGAGUACuCUa -3'
miRNA:   3'- uagGCG--------AGUgGUGGAUGCUCAUG-GAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.