miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 5' -55.4 NC_003521.1 + 235903 0.66 0.951608
Target:  5'- uUCgCGCUCACaCGCCUcGCGAcu-CCUGa -3'
miRNA:   3'- uAG-GCGAGUG-GUGGA-UGCUcauGGAC- -5'
13972 5' -55.4 NC_003521.1 + 112899 0.68 0.912273
Target:  5'- -gCCGCgagaUCGCCGCCUGgGAGgGCCc- -3'
miRNA:   3'- uaGGCG----AGUGGUGGAUgCUCaUGGac -5'
13972 5' -55.4 NC_003521.1 + 143454 0.67 0.933777
Target:  5'- -gCCGCUCgACCGCCaGCGcGUGCUc- -3'
miRNA:   3'- uaGGCGAG-UGGUGGaUGCuCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 136152 0.67 0.938577
Target:  5'- -gCCGC-CACCACCUGCuGGaGCCc- -3'
miRNA:   3'- uaGGCGaGUGGUGGAUGcUCaUGGac -5'
13972 5' -55.4 NC_003521.1 + 44067 0.67 0.94749
Target:  5'- gAUCCGCaacCcCUACCUGCGGGUcaaGCCg- -3'
miRNA:   3'- -UAGGCGa--GuGGUGGAUGCUCA---UGGac -5'
13972 5' -55.4 NC_003521.1 + 111498 0.67 0.94749
Target:  5'- --gCGCUCaACCGCCUGCuGGGcgACCUc -3'
miRNA:   3'- uagGCGAG-UGGUGGAUG-CUCa-UGGAc -5'
13972 5' -55.4 NC_003521.1 + 119875 0.67 0.949164
Target:  5'- gGUCCGCagucgguucuccucgUCGCC-CC-GCGGGUggGCCUGg -3'
miRNA:   3'- -UAGGCG---------------AGUGGuGGaUGCUCA--UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 134943 0.66 0.951608
Target:  5'- -gCCGuCUUGCgCACCUGCGAGUugaGgCUGa -3'
miRNA:   3'- uaGGC-GAGUG-GUGGAUGCUCA---UgGAC- -5'
13972 5' -55.4 NC_003521.1 + 145091 0.66 0.951608
Target:  5'- -gUgGCUCAgCCGCCUGCuGG-ACCUGg -3'
miRNA:   3'- uaGgCGAGU-GGUGGAUGcUCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 144469 0.68 0.900145
Target:  5'- uUCgGCgCGCCaccaccauaACCUGCGAGgaggACCUGg -3'
miRNA:   3'- uAGgCGaGUGG---------UGGAUGCUCa---UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 120042 0.68 0.893744
Target:  5'- gGUCgCGCUCGcCCACC-GCGcAGUGCCc- -3'
miRNA:   3'- -UAG-GCGAGU-GGUGGaUGC-UCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 144121 0.69 0.887122
Target:  5'- -aCCGC-CGCgGCCUggACGAGgugcGCCUGg -3'
miRNA:   3'- uaGGCGaGUGgUGGA--UGCUCa---UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 78493 0.74 0.647519
Target:  5'- -cCCGCagUCGCCGCCUGCGGGUAgUa- -3'
miRNA:   3'- uaGGCG--AGUGGUGGAUGCUCAUgGac -5'
13972 5' -55.4 NC_003521.1 + 223822 0.72 0.736483
Target:  5'- -gCCGC-CGCCACC-GCGGGcGCCUGc -3'
miRNA:   3'- uaGGCGaGUGGUGGaUGCUCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 43255 0.71 0.792236
Target:  5'- cAUCCGCcucaUCGCCAuCCUGCGucacUACCUGc -3'
miRNA:   3'- -UAGGCG----AGUGGU-GGAUGCuc--AUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 60609 0.71 0.792236
Target:  5'- --aCGCgcggCACCACCaacgccgagcGCGAGUACCUGu -3'
miRNA:   3'- uagGCGa---GUGGUGGa---------UGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 112786 0.7 0.83495
Target:  5'- -cCUGCUgGCCGCCUACGGGcacgcGCuCUGg -3'
miRNA:   3'- uaGGCGAgUGGUGGAUGCUCa----UG-GAC- -5'
13972 5' -55.4 NC_003521.1 + 29197 0.7 0.850842
Target:  5'- -gCC-CUCGCUGCgCaACGAGUACCUGg -3'
miRNA:   3'- uaGGcGAGUGGUG-GaUGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 121618 0.69 0.87323
Target:  5'- --gCGCUCACCACCUgGCGcAGcGCCa- -3'
miRNA:   3'- uagGCGAGUGGUGGA-UGC-UCaUGGac -5'
13972 5' -55.4 NC_003521.1 + 137631 0.69 0.880282
Target:  5'- -aCCGCUCGCgCAUCgcgguCGAGUACgUGc -3'
miRNA:   3'- uaGGCGAGUG-GUGGau---GCUCAUGgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.