miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 5' -55.4 NC_003521.1 + 208306 1.07 0.006261
Target:  5'- gAUCCGCUCACCACCUACGAGUACCUGg -3'
miRNA:   3'- -UAGGCGAGUGGUGGAUGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 36350 0.75 0.577321
Target:  5'- cGUCCuaUCACCugacgGCCUACGAGcacUACCUGa -3'
miRNA:   3'- -UAGGcgAGUGG-----UGGAUGCUC---AUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 78493 0.74 0.647519
Target:  5'- -cCCGCagUCGCCGCCUGCGGGUAgUa- -3'
miRNA:   3'- uaGGCG--AGUGGUGGAUGCUCAUgGac -5'
13972 5' -55.4 NC_003521.1 + 223822 0.72 0.736483
Target:  5'- -gCCGC-CGCCACC-GCGGGcGCCUGc -3'
miRNA:   3'- uaGGCGaGUGGUGGaUGCUCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 16396 0.72 0.746045
Target:  5'- -aCCGCUCGcCCACC-ACGcAGcGCCUGg -3'
miRNA:   3'- uaGGCGAGU-GGUGGaUGC-UCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 72337 0.71 0.764871
Target:  5'- cUCCGuCUCGCCGCCcAUGAucgACCUGa -3'
miRNA:   3'- uAGGC-GAGUGGUGGaUGCUca-UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 60609 0.71 0.792236
Target:  5'- --aCGCgcggCACCACCaacgccgagcGCGAGUACCUGu -3'
miRNA:   3'- uagGCGa---GUGGUGGa---------UGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 43255 0.71 0.792236
Target:  5'- cAUCCGCcucaUCGCCAuCCUGCGucacUACCUGc -3'
miRNA:   3'- -UAGGCG----AGUGGU-GGAUGCuc--AUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 191127 0.71 0.80109
Target:  5'- uAUCUGCg-ACCcgACCUACGAGUuCCUGa -3'
miRNA:   3'- -UAGGCGagUGG--UGGAUGCUCAuGGAC- -5'
13972 5' -55.4 NC_003521.1 + 183764 0.7 0.818347
Target:  5'- gAUCUG-UCGCCAgCUacacgggcaggACGAGUGCCUGg -3'
miRNA:   3'- -UAGGCgAGUGGUgGA-----------UGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 115176 0.7 0.818347
Target:  5'- -gCUGUUCaagACCAUCgACGAGUACCUGc -3'
miRNA:   3'- uaGGCGAG---UGGUGGaUGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 205185 0.7 0.826734
Target:  5'- -gCCGCUCGCagCGCgUGCGGG-ACCUGc -3'
miRNA:   3'- uaGGCGAGUG--GUGgAUGCUCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 112786 0.7 0.83495
Target:  5'- -cCUGCUgGCCGCCUACGGGcacgcGCuCUGg -3'
miRNA:   3'- uaGGCGAgUGGUGGAUGCUCa----UG-GAC- -5'
13972 5' -55.4 NC_003521.1 + 29197 0.7 0.850842
Target:  5'- -gCC-CUCGCUGCgCaACGAGUACCUGg -3'
miRNA:   3'- uaGGcGAGUGGUG-GaUGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 121618 0.69 0.87323
Target:  5'- --gCGCUCACCACCUgGCGcAGcGCCa- -3'
miRNA:   3'- uagGCGAGUGGUGGA-UGC-UCaUGGac -5'
13972 5' -55.4 NC_003521.1 + 137631 0.69 0.880282
Target:  5'- -aCCGCUCGCgCAUCgcgguCGAGUACgUGc -3'
miRNA:   3'- uaGGCGAGUG-GUGGau---GCUCAUGgAC- -5'
13972 5' -55.4 NC_003521.1 + 170686 0.69 0.887122
Target:  5'- --gCGCUCGCCGCagcuCGAGgcCCUGa -3'
miRNA:   3'- uagGCGAGUGGUGgau-GCUCauGGAC- -5'
13972 5' -55.4 NC_003521.1 + 144121 0.69 0.887122
Target:  5'- -aCCGC-CGCgGCCUggACGAGgugcGCCUGg -3'
miRNA:   3'- uaGGCGaGUGgUGGA--UGCUCa---UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 114265 0.68 0.893744
Target:  5'- -cCCGCUgccCACgGCCUucgcgcACGAGUACCa- -3'
miRNA:   3'- uaGGCGA---GUGgUGGA------UGCUCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 120042 0.68 0.893744
Target:  5'- gGUCgCGCUCGcCCACC-GCGcAGUGCCc- -3'
miRNA:   3'- -UAG-GCGAGU-GGUGGaUGC-UCAUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.