miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 5' -55.4 NC_003521.1 + 208306 1.07 0.006261
Target:  5'- gAUCCGCUCACCACCUACGAGUACCUGg -3'
miRNA:   3'- -UAGGCGAGUGGUGGAUGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 194270 0.67 0.933777
Target:  5'- -aCCGCuUCAgCACCcggcGCGAGgcCCUGg -3'
miRNA:   3'- uaGGCG-AGUgGUGGa---UGCUCauGGAC- -5'
13972 5' -55.4 NC_003521.1 + 187643 0.67 0.943147
Target:  5'- -gCCGCUgGCCAUCUucaucgGCGAGggcgGCCg- -3'
miRNA:   3'- uaGGCGAgUGGUGGA------UGCUCa---UGGac -5'
13972 5' -55.4 NC_003521.1 + 121813 0.66 0.968945
Target:  5'- aAUCCGUguUCGCCGCCUuCGAGgagAgCUc -3'
miRNA:   3'- -UAGGCG--AGUGGUGGAuGCUCa--UgGAc -5'
13972 5' -55.4 NC_003521.1 + 115176 0.7 0.818347
Target:  5'- -gCUGUUCaagACCAUCgACGAGUACCUGc -3'
miRNA:   3'- uaGGCGAG---UGGUGGaUGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 183764 0.7 0.818347
Target:  5'- gAUCUG-UCGCCAgCUacacgggcaggACGAGUGCCUGg -3'
miRNA:   3'- -UAGGCgAGUGGUgGA-----------UGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 170686 0.69 0.887122
Target:  5'- --gCGCUCGCCGCagcuCGAGgcCCUGa -3'
miRNA:   3'- uagGCGAGUGGUGgau-GCUCauGGAC- -5'
13972 5' -55.4 NC_003521.1 + 114265 0.68 0.893744
Target:  5'- -cCCGCUgccCACgGCCUucgcgcACGAGUACCa- -3'
miRNA:   3'- uaGGCGA---GUGgUGGA------UGCUCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 163027 0.68 0.912273
Target:  5'- gAUCCGCaucuacaccUCGCUGCUUgACGAGUgcGCCUGc -3'
miRNA:   3'- -UAGGCG---------AGUGGUGGA-UGCUCA--UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 131498 0.67 0.933777
Target:  5'- uGUCCGaacaCACCAgCUACGugacgggcgagaAGUACCUGc -3'
miRNA:   3'- -UAGGCga--GUGGUgGAUGC------------UCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 181821 0.68 0.921863
Target:  5'- uAUCgGUUCGCUACCUcuaccacgccgaccACcAGUGCCUGa -3'
miRNA:   3'- -UAGgCGAGUGGUGGA--------------UGcUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 185261 0.68 0.893744
Target:  5'- uGUCCGCUCA--ACC-GCGAGUGCUa- -3'
miRNA:   3'- -UAGGCGAGUggUGGaUGCUCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 16396 0.72 0.746045
Target:  5'- -aCCGCUCGcCCACC-ACGcAGcGCCUGg -3'
miRNA:   3'- uaGGCGAGU-GGUGGaUGC-UCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 23431 0.68 0.922947
Target:  5'- -gCCGCUCAgCCuggcgguGCCcACGGuGUGCCUGg -3'
miRNA:   3'- uaGGCGAGU-GG-------UGGaUGCU-CAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 72337 0.71 0.764871
Target:  5'- cUCCGuCUCGCCGCCcAUGAucgACCUGa -3'
miRNA:   3'- uAGGC-GAGUGGUGGaUGCUca-UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 148869 0.68 0.893744
Target:  5'- uUCCGCccUCGCCGCC-ACGGGguccGCCg- -3'
miRNA:   3'- uAGGCG--AGUGGUGGaUGCUCa---UGGac -5'
13972 5' -55.4 NC_003521.1 + 138525 0.68 0.923486
Target:  5'- -gCCGCgga-CGCCUacuacgacggggACGAGUACCUGa -3'
miRNA:   3'- uaGGCGagugGUGGA------------UGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 188502 0.67 0.938577
Target:  5'- gGUCCGC-CGCCGagaUACGAGgagGCCg- -3'
miRNA:   3'- -UAGGCGaGUGGUgg-AUGCUCa--UGGac -5'
13972 5' -55.4 NC_003521.1 + 191127 0.71 0.80109
Target:  5'- uAUCUGCg-ACCcgACCUACGAGUuCCUGa -3'
miRNA:   3'- -UAGGCGagUGG--UGGAUGCUCAuGGAC- -5'
13972 5' -55.4 NC_003521.1 + 205185 0.7 0.826734
Target:  5'- -gCCGCUCGCagCGCgUGCGGG-ACCUGc -3'
miRNA:   3'- uaGGCGAGUG--GUGgAUGCUCaUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.