miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 5' -55.4 NC_003521.1 + 13197 0.66 0.959181
Target:  5'- -gCCGCUCggGCCGCCgugUugGAGgGCCg- -3'
miRNA:   3'- uaGGCGAG--UGGUGG---AugCUCaUGGac -5'
13972 5' -55.4 NC_003521.1 + 18466 0.66 0.962644
Target:  5'- -aCCGCgggCugCGCg-GCGAGUgucGCCUGg -3'
miRNA:   3'- uaGGCGa--GugGUGgaUGCUCA---UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 9216 0.66 0.968945
Target:  5'- -aCCaGC-CACCACCUugGAG-AUUUGg -3'
miRNA:   3'- uaGG-CGaGUGGUGGAugCUCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 14324 0.66 0.959181
Target:  5'- uAUUCGCgCAUCuacGCCUACGAcacccgcgaccaGUACCUGg -3'
miRNA:   3'- -UAGGCGaGUGG---UGGAUGCU------------CAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 121813 0.66 0.968945
Target:  5'- aAUCCGUguUCGCCGCCUuCGAGgagAgCUc -3'
miRNA:   3'- -UAGGCG--AGUGGUGGAuGCUCa--UgGAc -5'
13972 5' -55.4 NC_003521.1 + 132323 0.66 0.965897
Target:  5'- -cCCGCgug-CGCCUGCGGGUGCUa- -3'
miRNA:   3'- uaGGCGagugGUGGAUGCUCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 162554 0.66 0.962644
Target:  5'- cAUCC--UCACgCGCCU-CGAGUACCUc -3'
miRNA:   3'- -UAGGcgAGUG-GUGGAuGCUCAUGGAc -5'
13972 5' -55.4 NC_003521.1 + 163422 0.67 0.943147
Target:  5'- cGUCgGCUgcCGCUGCCUACcaGGGUGCCa- -3'
miRNA:   3'- -UAGgCGA--GUGGUGGAUG--CUCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 188502 0.67 0.938577
Target:  5'- gGUCCGC-CGCCGagaUACGAGgagGCCg- -3'
miRNA:   3'- -UAGGCGaGUGGUgg-AUGCUCa--UGGac -5'
13972 5' -55.4 NC_003521.1 + 131498 0.67 0.933777
Target:  5'- uGUCCGaacaCACCAgCUACGugacgggcgagaAGUACCUGc -3'
miRNA:   3'- -UAGGCga--GUGGUgGAUGC------------UCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 119875 0.67 0.949164
Target:  5'- gGUCCGCagucgguucuccucgUCGCC-CC-GCGGGUggGCCUGg -3'
miRNA:   3'- -UAGGCG---------------AGUGGuGGaUGCUCA--UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 187643 0.67 0.943147
Target:  5'- -gCCGCUgGCCAUCUucaucgGCGAGggcgGCCg- -3'
miRNA:   3'- uaGGCGAgUGGUGGA------UGCUCa---UGGac -5'
13972 5' -55.4 NC_003521.1 + 194270 0.67 0.933777
Target:  5'- -aCCGCuUCAgCACCcggcGCGAGgcCCUGg -3'
miRNA:   3'- uaGGCG-AGUgGUGGa---UGCUCauGGAC- -5'
13972 5' -55.4 NC_003521.1 + 44067 0.67 0.94749
Target:  5'- gAUCCGCaacCcCUACCUGCGGGUcaaGCCg- -3'
miRNA:   3'- -UAGGCGa--GuGGUGGAUGCUCA---UGGac -5'
13972 5' -55.4 NC_003521.1 + 143454 0.67 0.933777
Target:  5'- -gCCGCUCgACCGCCaGCGcGUGCUc- -3'
miRNA:   3'- uaGGCGAG-UGGUGGaUGCuCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 136152 0.67 0.938577
Target:  5'- -gCCGC-CACCACCUGCuGGaGCCc- -3'
miRNA:   3'- uaGGCGaGUGGUGGAUGcUCaUGGac -5'
13972 5' -55.4 NC_003521.1 + 111498 0.67 0.94749
Target:  5'- --gCGCUCaACCGCCUGCuGGGcgACCUc -3'
miRNA:   3'- uagGCGAG-UGGUGGAUG-CUCa-UGGAc -5'
13972 5' -55.4 NC_003521.1 + 75328 0.67 0.94749
Target:  5'- -gCCGaggCGCagAgCUGCGAGUACCUGa -3'
miRNA:   3'- uaGGCga-GUGg-UgGAUGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 181821 0.68 0.921863
Target:  5'- uAUCgGUUCGCUACCUcuaccacgccgaccACcAGUGCCUGa -3'
miRNA:   3'- -UAGgCGAGUGGUGGA--------------UGcUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 112899 0.68 0.912273
Target:  5'- -gCCGCgagaUCGCCGCCUGgGAGgGCCc- -3'
miRNA:   3'- uaGGCG----AGUGGUGGAUgCUCaUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.