Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13972 | 5' | -55.4 | NC_003521.1 | + | 138525 | 0.68 | 0.923486 |
Target: 5'- -gCCGCgga-CGCCUacuacgacggggACGAGUACCUGa -3' miRNA: 3'- uaGGCGagugGUGGA------------UGCUCAUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 143454 | 0.67 | 0.933777 |
Target: 5'- -gCCGCUCgACCGCCaGCGcGUGCUc- -3' miRNA: 3'- uaGGCGAG-UGGUGGaUGCuCAUGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 143532 | 0.66 | 0.955504 |
Target: 5'- gAUCCGCacgcgCGCCGCCggcgACGAGcagcaGCCg- -3' miRNA: 3'- -UAGGCGa----GUGGUGGa---UGCUCa----UGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 144121 | 0.69 | 0.887122 |
Target: 5'- -aCCGC-CGCgGCCUggACGAGgugcGCCUGg -3' miRNA: 3'- uaGGCGaGUGgUGGA--UGCUCa---UGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 144469 | 0.68 | 0.900145 |
Target: 5'- uUCgGCgCGCCaccaccauaACCUGCGAGgaggACCUGg -3' miRNA: 3'- uAGgCGaGUGG---------UGGAUGCUCa---UGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 145091 | 0.66 | 0.951608 |
Target: 5'- -gUgGCUCAgCCGCCUGCuGG-ACCUGg -3' miRNA: 3'- uaGgCGAGU-GGUGGAUGcUCaUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 148869 | 0.68 | 0.893744 |
Target: 5'- uUCCGCccUCGCCGCC-ACGGGguccGCCg- -3' miRNA: 3'- uAGGCG--AGUGGUGGaUGCUCa---UGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 162554 | 0.66 | 0.962644 |
Target: 5'- cAUCC--UCACgCGCCU-CGAGUACCUc -3' miRNA: 3'- -UAGGcgAGUG-GUGGAuGCUCAUGGAc -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 163027 | 0.68 | 0.912273 |
Target: 5'- gAUCCGCaucuacaccUCGCUGCUUgACGAGUgcGCCUGc -3' miRNA: 3'- -UAGGCG---------AGUGGUGGA-UGCUCA--UGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 163422 | 0.67 | 0.943147 |
Target: 5'- cGUCgGCUgcCGCUGCCUACcaGGGUGCCa- -3' miRNA: 3'- -UAGgCGA--GUGGUGGAUG--CUCAUGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 170686 | 0.69 | 0.887122 |
Target: 5'- --gCGCUCGCCGCagcuCGAGgcCCUGa -3' miRNA: 3'- uagGCGAGUGGUGgau-GCUCauGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 174462 | 0.66 | 0.965897 |
Target: 5'- -gCUGCUCGCCGCCggccACGcgagcgggauccAGUugCUGc -3' miRNA: 3'- uaGGCGAGUGGUGGa---UGC------------UCAugGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 175690 | 0.66 | 0.965897 |
Target: 5'- gGUCCGCUugCGCCAUCUGuCG-GUACUc- -3' miRNA: 3'- -UAGGCGA--GUGGUGGAU-GCuCAUGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 181821 | 0.68 | 0.921863 |
Target: 5'- uAUCgGUUCGCUACCUcuaccacgccgaccACcAGUGCCUGa -3' miRNA: 3'- -UAGgCGAGUGGUGGA--------------UGcUCAUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 183764 | 0.7 | 0.818347 |
Target: 5'- gAUCUG-UCGCCAgCUacacgggcaggACGAGUGCCUGg -3' miRNA: 3'- -UAGGCgAGUGGUgGA-----------UGCUCAUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 185261 | 0.68 | 0.893744 |
Target: 5'- uGUCCGCUCA--ACC-GCGAGUGCUa- -3' miRNA: 3'- -UAGGCGAGUggUGGaUGCUCAUGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 187643 | 0.67 | 0.943147 |
Target: 5'- -gCCGCUgGCCAUCUucaucgGCGAGggcgGCCg- -3' miRNA: 3'- uaGGCGAgUGGUGGA------UGCUCa---UGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 188502 | 0.67 | 0.938577 |
Target: 5'- gGUCCGC-CGCCGagaUACGAGgagGCCg- -3' miRNA: 3'- -UAGGCGaGUGGUgg-AUGCUCa--UGGac -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 191127 | 0.71 | 0.80109 |
Target: 5'- uAUCUGCg-ACCcgACCUACGAGUuCCUGa -3' miRNA: 3'- -UAGGCGagUGG--UGGAUGCUCAuGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 194270 | 0.67 | 0.933777 |
Target: 5'- -aCCGCuUCAgCACCcggcGCGAGgcCCUGg -3' miRNA: 3'- uaGGCG-AGUgGUGGa---UGCUCauGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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