miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 5' -55.4 NC_003521.1 + 112899 0.68 0.912273
Target:  5'- -gCCGCgagaUCGCCGCCUGgGAGgGCCc- -3'
miRNA:   3'- uaGGCG----AGUGGUGGAUgCUCaUGGac -5'
13972 5' -55.4 NC_003521.1 + 112786 0.7 0.83495
Target:  5'- -cCUGCUgGCCGCCUACGGGcacgcGCuCUGg -3'
miRNA:   3'- uaGGCGAgUGGUGGAUGCUCa----UG-GAC- -5'
13972 5' -55.4 NC_003521.1 + 111498 0.67 0.94749
Target:  5'- --gCGCUCaACCGCCUGCuGGGcgACCUc -3'
miRNA:   3'- uagGCGAG-UGGUGGAUG-CUCa-UGGAc -5'
13972 5' -55.4 NC_003521.1 + 78493 0.74 0.647519
Target:  5'- -cCCGCagUCGCCGCCUGCGGGUAgUa- -3'
miRNA:   3'- uaGGCG--AGUGGUGGAUGCUCAUgGac -5'
13972 5' -55.4 NC_003521.1 + 76268 0.66 0.968945
Target:  5'- --gCGCacgGCCGCCUGCGAG-ACCUc -3'
miRNA:   3'- uagGCGag-UGGUGGAUGCUCaUGGAc -5'
13972 5' -55.4 NC_003521.1 + 75328 0.67 0.94749
Target:  5'- -gCCGaggCGCagAgCUGCGAGUACCUGa -3'
miRNA:   3'- uaGGCga-GUGg-UgGAUGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 73977 0.66 0.949988
Target:  5'- -gCCGCgcCACCGCCUGCGuauccucaccgucGUcGCCUGg -3'
miRNA:   3'- uaGGCGa-GUGGUGGAUGCu------------CA-UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 73672 0.66 0.962644
Target:  5'- --aCGCcaucaacaUCAgCACCUGCGAGUACuCUa -3'
miRNA:   3'- uagGCG--------AGUgGUGGAUGCUCAUG-GAc -5'
13972 5' -55.4 NC_003521.1 + 72337 0.71 0.764871
Target:  5'- cUCCGuCUCGCCGCCcAUGAucgACCUGa -3'
miRNA:   3'- uAGGC-GAGUGGUGGaUGCUca-UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 62581 0.66 0.968945
Target:  5'- --aCGC-CGCCGCCUACcAGUGCgaGa -3'
miRNA:   3'- uagGCGaGUGGUGGAUGcUCAUGgaC- -5'
13972 5' -55.4 NC_003521.1 + 60609 0.71 0.792236
Target:  5'- --aCGCgcggCACCACCaacgccgagcGCGAGUACCUGu -3'
miRNA:   3'- uagGCGa---GUGGUGGa---------UGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 44067 0.67 0.94749
Target:  5'- gAUCCGCaacCcCUACCUGCGGGUcaaGCCg- -3'
miRNA:   3'- -UAGGCGa--GuGGUGGAUGCUCA---UGGac -5'
13972 5' -55.4 NC_003521.1 + 43255 0.71 0.792236
Target:  5'- cAUCCGCcucaUCGCCAuCCUGCGucacUACCUGc -3'
miRNA:   3'- -UAGGCG----AGUGGU-GGAUGCuc--AUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 36350 0.75 0.577321
Target:  5'- cGUCCuaUCACCugacgGCCUACGAGcacUACCUGa -3'
miRNA:   3'- -UAGGcgAGUGG-----UGGAUGCUC---AUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 29197 0.7 0.850842
Target:  5'- -gCC-CUCGCUGCgCaACGAGUACCUGg -3'
miRNA:   3'- uaGGcGAGUGGUG-GaUGCUCAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 23431 0.68 0.922947
Target:  5'- -gCCGCUCAgCCuggcgguGCCcACGGuGUGCCUGg -3'
miRNA:   3'- uaGGCGAGU-GG-------UGGaUGCU-CAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 22201 0.68 0.917433
Target:  5'- -gCCGCUUACCGCCgcgcgcugGCGGccgaaccGUACCUc -3'
miRNA:   3'- uaGGCGAGUGGUGGa-------UGCU-------CAUGGAc -5'
13972 5' -55.4 NC_003521.1 + 21551 0.66 0.965897
Target:  5'- -cCCGCUCauguGCCAgccCCUGCGGGc-CCUGc -3'
miRNA:   3'- uaGGCGAG----UGGU---GGAUGCUCauGGAC- -5'
13972 5' -55.4 NC_003521.1 + 20681 0.66 0.962644
Target:  5'- -gCUGUUCAUCACCUucACGG--GCCUGg -3'
miRNA:   3'- uaGGCGAGUGGUGGA--UGCUcaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 18466 0.66 0.962644
Target:  5'- -aCCGCgggCugCGCg-GCGAGUgucGCCUGg -3'
miRNA:   3'- uaGGCGa--GugGUGgaUGCUCA---UGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.