Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13972 | 5' | -55.4 | NC_003521.1 | + | 22201 | 0.68 | 0.917433 |
Target: 5'- -gCCGCUUACCGCCgcgcgcugGCGGccgaaccGUACCUc -3' miRNA: 3'- uaGGCGAGUGGUGGa-------UGCU-------CAUGGAc -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 181821 | 0.68 | 0.921863 |
Target: 5'- uAUCgGUUCGCUACCUcuaccacgccgaccACcAGUGCCUGa -3' miRNA: 3'- -UAGgCGAGUGGUGGA--------------UGcUCAUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 23431 | 0.68 | 0.922947 |
Target: 5'- -gCCGCUCAgCCuggcgguGCCcACGGuGUGCCUGg -3' miRNA: 3'- uaGGCGAGU-GG-------UGGaUGCU-CAUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 138525 | 0.68 | 0.923486 |
Target: 5'- -gCCGCgga-CGCCUacuacgacggggACGAGUACCUGa -3' miRNA: 3'- uaGGCGagugGUGGA------------UGCUCAUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 131498 | 0.67 | 0.933777 |
Target: 5'- uGUCCGaacaCACCAgCUACGugacgggcgagaAGUACCUGc -3' miRNA: 3'- -UAGGCga--GUGGUgGAUGC------------UCAUGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 194270 | 0.67 | 0.933777 |
Target: 5'- -aCCGCuUCAgCACCcggcGCGAGgcCCUGg -3' miRNA: 3'- uaGGCG-AGUgGUGGa---UGCUCauGGAC- -5' |
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13972 | 5' | -55.4 | NC_003521.1 | + | 208306 | 1.07 | 0.006261 |
Target: 5'- gAUCCGCUCACCACCUACGAGUACCUGg -3' miRNA: 3'- -UAGGCGAGUGGUGGAUGCUCAUGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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