miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 3' -63.1 NC_003521.1 + 142291 0.67 0.673875
Target:  5'- -cCCGCCGcCG-CUGCagcggcccaGCCGCgCGCGu -3'
miRNA:   3'- aaGGCGGCaGCaGACG---------CGGCG-GCGCu -5'
13973 3' -63.1 NC_003521.1 + 25164 0.67 0.664428
Target:  5'- gUCgCGCUuUCG-CUGCucCCGCCGCGAc -3'
miRNA:   3'- aAG-GCGGcAGCaGACGc-GGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 45429 0.67 0.664428
Target:  5'- -cCCGCCGUCGgcgCggucaugGCcUCGCCGUGGc -3'
miRNA:   3'- aaGGCGGCAGCa--Ga------CGcGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 167970 0.67 0.664428
Target:  5'- -aCCGCCGUgccuacCGUCgccGCgcccagGCCGUCGCGGu -3'
miRNA:   3'- aaGGCGGCA------GCAGa--CG------CGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 115495 0.67 0.664428
Target:  5'- -gCCGCgUGUCGcUCUGUGgccggacccaCCGCCGCGu -3'
miRNA:   3'- aaGGCG-GCAGC-AGACGC----------GGCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 165929 0.67 0.664427
Target:  5'- -aCCGCCGccacCGUCUcGCGCagcagCGCCGUGu -3'
miRNA:   3'- aaGGCGGCa---GCAGA-CGCG-----GCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 129988 0.67 0.664427
Target:  5'- -gUCGCUGcCG-CUGCGCCGgCgGCGGc -3'
miRNA:   3'- aaGGCGGCaGCaGACGCGGC-GgCGCU- -5'
13973 3' -63.1 NC_003521.1 + 104053 0.67 0.664427
Target:  5'- cUCCGaCGcCGUCUGCGCCaGCaCGUu- -3'
miRNA:   3'- aAGGCgGCaGCAGACGCGG-CG-GCGcu -5'
13973 3' -63.1 NC_003521.1 + 127057 0.67 0.663481
Target:  5'- -gUCGCCGUCGUCgacGCggccugucggucaGCCGCCaGCa- -3'
miRNA:   3'- aaGGCGGCAGCAGa--CG-------------CGGCGG-CGcu -5'
13973 3' -63.1 NC_003521.1 + 165197 0.67 0.655906
Target:  5'- -gCCGUCGucaUCGUCggcgacugagccgugGCGCCGCC-CGAa -3'
miRNA:   3'- aaGGCGGC---AGCAGa--------------CGCGGCGGcGCU- -5'
13973 3' -63.1 NC_003521.1 + 166234 0.67 0.654958
Target:  5'- --gCGCCGgccgCGggacgCcGCGCCGCCGCu- -3'
miRNA:   3'- aagGCGGCa---GCa----GaCGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 72442 0.67 0.654957
Target:  5'- -cUCGCCGUCGUCgucGCGaCUGUCGUc- -3'
miRNA:   3'- aaGGCGGCAGCAGa--CGC-GGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 74599 0.67 0.654957
Target:  5'- gUCCcgcgGCCGgcgCGcCU-CGCCGCCGCGc -3'
miRNA:   3'- aAGG----CGGCa--GCaGAcGCGGCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 135848 0.67 0.645472
Target:  5'- cUCCuCCGaCGUCUcgcgGCGCCcCCGCGGc -3'
miRNA:   3'- aAGGcGGCaGCAGA----CGCGGcGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 163112 0.67 0.645472
Target:  5'- -gCCGCCGUCGcCaacaaCGCCGCCaCGGc -3'
miRNA:   3'- aaGGCGGCAGCaGac---GCGGCGGcGCU- -5'
13973 3' -63.1 NC_003521.1 + 1379 0.67 0.645472
Target:  5'- -aCCGCUGUCcccgaGcCcGCGCUGCUGCGGa -3'
miRNA:   3'- aaGGCGGCAG-----CaGaCGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 122844 0.67 0.645472
Target:  5'- gUCgCGCagcuCGUCGUagcgcuggugCUGgcCGCCGCCGCGAu -3'
miRNA:   3'- aAG-GCG----GCAGCA----------GAC--GCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 93945 0.67 0.645472
Target:  5'- -cCCGCCGUCGUCUG-GCUuCCuccucuggGCGGg -3'
miRNA:   3'- aaGGCGGCAGCAGACgCGGcGG--------CGCU- -5'
13973 3' -63.1 NC_003521.1 + 201606 0.67 0.645471
Target:  5'- -aCCGCUGUCcccgaGcCcGCGCUGCUGCGGa -3'
miRNA:   3'- aaGGCGGCAG-----CaGaCGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 168958 0.67 0.645471
Target:  5'- -gUCGCCGUCGcucccgCUGCuGUCGCCGaCGc -3'
miRNA:   3'- aaGGCGGCAGCa-----GACG-CGGCGGC-GCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.