miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 3' -63.1 NC_003521.1 + 228237 0.66 0.711302
Target:  5'- --aCGCUgGUCGUgguggGUGCCGCCGUGGu -3'
miRNA:   3'- aagGCGG-CAGCAga---CGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 197842 0.66 0.711302
Target:  5'- gUCUGCagGUCGUCgguggGCGCCGgCGgGu -3'
miRNA:   3'- aAGGCGg-CAGCAGa----CGCGGCgGCgCu -5'
13973 3' -63.1 NC_003521.1 + 17455 0.66 0.711302
Target:  5'- -gCCGCgaUGUCG-CUGCugaccaagGCCGCCGcCGAg -3'
miRNA:   3'- aaGGCG--GCAGCaGACG--------CGGCGGC-GCU- -5'
13973 3' -63.1 NC_003521.1 + 50408 0.66 0.711302
Target:  5'- -cUCGCCGUCGaC-GCGCU-CCGCGGa -3'
miRNA:   3'- aaGGCGGCAGCaGaCGCGGcGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 185742 0.66 0.710376
Target:  5'- -aUCGCCGagCGggUGCGCCggagcgccuagggGCCGCGAu -3'
miRNA:   3'- aaGGCGGCa-GCagACGCGG-------------CGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 138042 0.66 0.702015
Target:  5'- -gCCGCCGgcgcCGUCaucGCGCaGCCGCu- -3'
miRNA:   3'- aaGGCGGCa---GCAGa--CGCGgCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 108712 0.66 0.702015
Target:  5'- ---gGCCG-CG-CUGCGCCGCCucaaauacuagGCGAu -3'
miRNA:   3'- aaggCGGCaGCaGACGCGGCGG-----------CGCU- -5'
13973 3' -63.1 NC_003521.1 + 48004 0.66 0.702015
Target:  5'- -gCCGCCGggCuUCUGCggcuGCUGCCaGCGAu -3'
miRNA:   3'- aaGGCGGCa-GcAGACG----CGGCGG-CGCU- -5'
13973 3' -63.1 NC_003521.1 + 195846 0.66 0.702014
Target:  5'- -cCCGCCucuggCGUCaGCGCUGUCGCc- -3'
miRNA:   3'- aaGGCGGca---GCAGaCGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 137684 0.66 0.702014
Target:  5'- aUCCGCC-UgGUgCUGCagcaCCGCCGCGc -3'
miRNA:   3'- aAGGCGGcAgCA-GACGc---GGCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 192167 0.66 0.702014
Target:  5'- gUCUGCgGU-GUCaGCGCCGgUCGCGGc -3'
miRNA:   3'- aAGGCGgCAgCAGaCGCGGC-GGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 117408 0.66 0.702014
Target:  5'- -cCCGCCGUCG---GUGCCGugcCCGCGu -3'
miRNA:   3'- aaGGCGGCAGCagaCGCGGC---GGCGCu -5'
13973 3' -63.1 NC_003521.1 + 214723 0.66 0.702014
Target:  5'- -aCCGCguCGUCuGUCUgggcuucggucaGCGCCGCCGUc- -3'
miRNA:   3'- aaGGCG--GCAG-CAGA------------CGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 225874 0.66 0.70015
Target:  5'- --gUGCCGgugcuccaugcgCGUCUgGCGCUGCCGCu- -3'
miRNA:   3'- aagGCGGCa-----------GCAGA-CGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 194549 0.66 0.692676
Target:  5'- gUCUGCCG-CGUCggGCGCC-UCGuCGAa -3'
miRNA:   3'- aAGGCGGCaGCAGa-CGCGGcGGC-GCU- -5'
13973 3' -63.1 NC_003521.1 + 148809 0.66 0.692676
Target:  5'- -aCCGCCGcCGcCgccGCGCCucGCCGCu- -3'
miRNA:   3'- aaGGCGGCaGCaGa--CGCGG--CGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 227974 0.66 0.692676
Target:  5'- -aCCGCUG-CGUCUGCuCgCGCaCGUGAu -3'
miRNA:   3'- aaGGCGGCaGCAGACGcG-GCG-GCGCU- -5'
13973 3' -63.1 NC_003521.1 + 163042 0.66 0.683294
Target:  5'- -cUCGCUGcuugaCGagUGCGCCuGCCGCGAc -3'
miRNA:   3'- aaGGCGGCa----GCagACGCGG-CGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 109582 0.67 0.673876
Target:  5'- -gCCGCUccCGUCggcauCGCCGUCGCGAc -3'
miRNA:   3'- aaGGCGGcaGCAGac---GCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 142291 0.67 0.673875
Target:  5'- -cCCGCCGcCG-CUGCagcggcccaGCCGCgCGCGu -3'
miRNA:   3'- aaGGCGGCaGCaGACG---------CGGCG-GCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.