miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 3' -63.1 NC_003521.1 + 227974 0.66 0.692676
Target:  5'- -aCCGCUG-CGUCUGCuCgCGCaCGUGAu -3'
miRNA:   3'- aaGGCGGCaGCAGACGcG-GCG-GCGCU- -5'
13973 3' -63.1 NC_003521.1 + 194549 0.66 0.692676
Target:  5'- gUCUGCCG-CGUCggGCGCC-UCGuCGAa -3'
miRNA:   3'- aAGGCGGCaGCAGa-CGCGGcGGC-GCU- -5'
13973 3' -63.1 NC_003521.1 + 148890 0.66 0.721452
Target:  5'- gUCCGCCGcCGgguccaccgcauCGCCGCCGCc- -3'
miRNA:   3'- aAGGCGGCaGCagac--------GCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 197842 0.66 0.711302
Target:  5'- gUCUGCagGUCGUCgguggGCGCCGgCGgGu -3'
miRNA:   3'- aAGGCGg-CAGCAGa----CGCGGCgGCgCu -5'
13973 3' -63.1 NC_003521.1 + 185742 0.66 0.710376
Target:  5'- -aUCGCCGagCGggUGCGCCggagcgccuagggGCCGCGAu -3'
miRNA:   3'- aaGGCGGCa-GCagACGCGG-------------CGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 108712 0.66 0.702015
Target:  5'- ---gGCCG-CG-CUGCGCCGCCucaaauacuagGCGAu -3'
miRNA:   3'- aaggCGGCaGCaGACGCGGCGG-----------CGCU- -5'
13973 3' -63.1 NC_003521.1 + 48004 0.66 0.702015
Target:  5'- -gCCGCCGggCuUCUGCggcuGCUGCCaGCGAu -3'
miRNA:   3'- aaGGCGGCa-GcAGACG----CGGCGG-CGCU- -5'
13973 3' -63.1 NC_003521.1 + 43338 0.66 0.720532
Target:  5'- cUCCG-CGcCGUCcgGC-CCGCCGCGc -3'
miRNA:   3'- aAGGCgGCaGCAGa-CGcGGCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 214815 0.66 0.720532
Target:  5'- uUUCUGCacauggGUCUGCGgCGCUGCGGc -3'
miRNA:   3'- -AAGGCGgcag--CAGACGCgGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 183645 0.66 0.729697
Target:  5'- cUgCGCCGcuUCGUgCUGCgGCaCGCCGaCGAc -3'
miRNA:   3'- aAgGCGGC--AGCA-GACG-CG-GCGGC-GCU- -5'
13973 3' -63.1 NC_003521.1 + 61973 0.66 0.729697
Target:  5'- -cCCGCUGacuuuccCGUCgcccccGCGCCGCCugaGCGAg -3'
miRNA:   3'- aaGGCGGCa------GCAGa-----CGCGGCGG---CGCU- -5'
13973 3' -63.1 NC_003521.1 + 233839 0.66 0.729697
Target:  5'- -aCCGCCGUgucgugCGUCUGCGCguccUGUCGUccGAg -3'
miRNA:   3'- aaGGCGGCA------GCAGACGCG----GCGGCG--CU- -5'
13973 3' -63.1 NC_003521.1 + 122900 0.66 0.720532
Target:  5'- cUCCcCCGUC--CUGCGCacCGCCGUGGu -3'
miRNA:   3'- aAGGcGGCAGcaGACGCG--GCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 107450 0.66 0.729697
Target:  5'- -aCCGCCG-CG-CUGUGCCGgCG-GAc -3'
miRNA:   3'- aaGGCGGCaGCaGACGCGGCgGCgCU- -5'
13973 3' -63.1 NC_003521.1 + 17455 0.66 0.711302
Target:  5'- -gCCGCgaUGUCG-CUGCugaccaagGCCGCCGcCGAg -3'
miRNA:   3'- aaGGCG--GCAGCaGACG--------CGGCGGC-GCU- -5'
13973 3' -63.1 NC_003521.1 + 1442 0.66 0.711302
Target:  5'- ---gGCCG-CGagCUGCGCCGCCgGUGGc -3'
miRNA:   3'- aaggCGGCaGCa-GACGCGGCGG-CGCU- -5'
13973 3' -63.1 NC_003521.1 + 228237 0.66 0.711302
Target:  5'- --aCGCUgGUCGUgguggGUGCCGCCGUGGu -3'
miRNA:   3'- aagGCGG-CAGCAga---CGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 148809 0.66 0.692676
Target:  5'- -aCCGCCGcCGcCgccGCGCCucGCCGCu- -3'
miRNA:   3'- aaGGCGGCaGCaGa--CGCGG--CGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 102315 0.67 0.626479
Target:  5'- gUCCGCggcauCGUCGUCgUGCGCgugggcgccgaCGCCGgGGu -3'
miRNA:   3'- aAGGCG-----GCAGCAG-ACGCG-----------GCGGCgCU- -5'
13973 3' -63.1 NC_003521.1 + 74599 0.67 0.654957
Target:  5'- gUCCcgcgGCCGgcgCGcCU-CGCCGCCGCGc -3'
miRNA:   3'- aAGG----CGGCa--GCaGAcGCGGCGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.