miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 3' -63.1 NC_003521.1 + 77068 0.74 0.302177
Target:  5'- -gCCGCCGcCGUgaGCGCCGCUGUu- -3'
miRNA:   3'- aaGGCGGCaGCAgaCGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 105576 0.73 0.308713
Target:  5'- gUCCGCCGcCGUgUcGuCGCCGCCGCc- -3'
miRNA:   3'- aAGGCGGCaGCAgA-C-GCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 8463 0.73 0.308713
Target:  5'- cUCCGCU-UCG-CgGUGCCGCCGCGAc -3'
miRNA:   3'- aAGGCGGcAGCaGaCGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 143170 0.73 0.315356
Target:  5'- -cCCGUgGggGUCggacccgGCGCCGCCGCGAa -3'
miRNA:   3'- aaGGCGgCagCAGa------CGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 98038 0.73 0.322106
Target:  5'- -aCCGCCGUUGgugGCaccgacgacGCCGCCGCGGa -3'
miRNA:   3'- aaGGCGGCAGCagaCG---------CGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 118910 0.73 0.322106
Target:  5'- -cUCGCCcUCGUCgGCGCCGCgGCGu -3'
miRNA:   3'- aaGGCGGcAGCAGaCGCGGCGgCGCu -5'
13973 3' -63.1 NC_003521.1 + 84741 0.73 0.328274
Target:  5'- -gCCGUCGUCGUCUugcucggGCGCgGCgGCGGc -3'
miRNA:   3'- aaGGCGGCAGCAGA-------CGCGgCGgCGCU- -5'
13973 3' -63.1 NC_003521.1 + 214806 0.73 0.328964
Target:  5'- -aCCGCCGUCGg--GCGCCgGgCGCGGc -3'
miRNA:   3'- aaGGCGGCAGCagaCGCGG-CgGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 44152 0.73 0.334527
Target:  5'- --aCGCCGUCGUCgagcagcagcugGCGCCGucgguacuCCGCGAg -3'
miRNA:   3'- aagGCGGCAGCAGa-----------CGCGGC--------GGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 142178 0.73 0.334527
Target:  5'- -cUCGCCGUCGUCgacgccgcuacCGCCGCCGCc- -3'
miRNA:   3'- aaGGCGGCAGCAGac---------GCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 171629 0.72 0.347296
Target:  5'- -gCCGCCGaCGUCggguaugucuagcGCGCCGCgGCGGg -3'
miRNA:   3'- aaGGCGGCaGCAGa------------CGCGGCGgCGCU- -5'
13973 3' -63.1 NC_003521.1 + 63324 0.72 0.349457
Target:  5'- cUCCGCguuucuggacuuaUGUCGUCgGCGCCG-CGCGAu -3'
miRNA:   3'- aAGGCG-------------GCAGCAGaCGCGGCgGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 233165 0.72 0.35018
Target:  5'- -aCCGCUGUCc---GCGCCGCCGUGGc -3'
miRNA:   3'- aaGGCGGCAGcagaCGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 48361 0.72 0.354538
Target:  5'- -aCCGCCGUCcuggaaaccgGCGCCGCCGCc- -3'
miRNA:   3'- aaGGCGGCAGcaga------CGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 212849 0.72 0.357465
Target:  5'- -gCCGCCGUggcCGUgaGCGCCGCCugGCGu -3'
miRNA:   3'- aaGGCGGCA---GCAgaCGCGGCGG--CGCu -5'
13973 3' -63.1 NC_003521.1 + 148942 0.72 0.364855
Target:  5'- gUCCGuCCGUgGUCgcacCGCCGCCGCc- -3'
miRNA:   3'- aAGGC-GGCAgCAGac--GCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 77449 0.72 0.378422
Target:  5'- -gCCGCCGUUGgugcccgugacaCUGcCGCCGCCGCu- -3'
miRNA:   3'- aaGGCGGCAGCa-----------GAC-GCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 97453 0.72 0.37995
Target:  5'- cUUUCGaCCGUCGUCguUGCCGCCGCu- -3'
miRNA:   3'- -AAGGC-GGCAGCAGacGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 94941 0.72 0.387653
Target:  5'- -gCCGCCGgcggccucgUCGUCgGCGCCGcCCGCc- -3'
miRNA:   3'- aaGGCGGC---------AGCAGaCGCGGC-GGCGcu -5'
13973 3' -63.1 NC_003521.1 + 185067 0.71 0.395458
Target:  5'- -aCCGCCGgccgCGcCUGuCGCUGCCGCc- -3'
miRNA:   3'- aaGGCGGCa---GCaGAC-GCGGCGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.