miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 3' -63.1 NC_003521.1 + 44152 0.73 0.334527
Target:  5'- --aCGCCGUCGUCgagcagcagcugGCGCCGucgguacuCCGCGAg -3'
miRNA:   3'- aagGCGGCAGCAGa-----------CGCGGC--------GGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 44510 0.7 0.45282
Target:  5'- -gCCGCCGUCGUCagGCGgCGCagGgGAa -3'
miRNA:   3'- aaGGCGGCAGCAGa-CGCgGCGg-CgCU- -5'
13973 3' -63.1 NC_003521.1 + 45429 0.67 0.664428
Target:  5'- -cCCGCCGUCGgcgCggucaugGCcUCGCCGUGGc -3'
miRNA:   3'- aaGGCGGCAGCa--Ga------CGcGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 47305 0.7 0.470028
Target:  5'- gUCCGauCCGUCGUCUcaGCCGCUguGCGAg -3'
miRNA:   3'- aAGGC--GGCAGCAGAcgCGGCGG--CGCU- -5'
13973 3' -63.1 NC_003521.1 + 48004 0.66 0.702015
Target:  5'- -gCCGCCGggCuUCUGCggcuGCUGCCaGCGAu -3'
miRNA:   3'- aaGGCGGCa-GcAGACG----CGGCGG-CGCU- -5'
13973 3' -63.1 NC_003521.1 + 48361 0.72 0.354538
Target:  5'- -aCCGCCGUCcuggaaaccgGCGCCGCCGCc- -3'
miRNA:   3'- aaGGCGGCAGcaga------CGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 48782 0.68 0.598033
Target:  5'- --aCGCCG-CGUCUgccGCGCaCGCCgGCGGu -3'
miRNA:   3'- aagGCGGCaGCAGA---CGCG-GCGG-CGCU- -5'
13973 3' -63.1 NC_003521.1 + 50287 0.7 0.478755
Target:  5'- gUCCGCCG----CUGCuGCCGCCGCa- -3'
miRNA:   3'- aAGGCGGCagcaGACG-CGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 50408 0.66 0.711302
Target:  5'- -cUCGCCGUCGaC-GCGCU-CCGCGGa -3'
miRNA:   3'- aaGGCGGCAGCaGaCGCGGcGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 54148 0.66 0.711302
Target:  5'- -aCCGCCGgCGUUggaGagGCCGCCGCc- -3'
miRNA:   3'- aaGGCGGCaGCAGa--Cg-CGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 57985 0.74 0.289427
Target:  5'- -gCUGCUGUUGUCaGCGCCGCCgaucGCGGa -3'
miRNA:   3'- aaGGCGGCAGCAGaCGCGGCGG----CGCU- -5'
13973 3' -63.1 NC_003521.1 + 61973 0.66 0.729697
Target:  5'- -cCCGCUGacuuuccCGUCgcccccGCGCCGCCugaGCGAg -3'
miRNA:   3'- aaGGCGGCa------GCAGa-----CGCGGCGG---CGCU- -5'
13973 3' -63.1 NC_003521.1 + 62479 0.7 0.44942
Target:  5'- -aCCGCCGUCGUCgucaugucuccggGC-CCGCUGCu- -3'
miRNA:   3'- aaGGCGGCAGCAGa------------CGcGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 62560 0.66 0.729697
Target:  5'- -aCCGCaCGUCGcaaUGCagcaacGCCGCCGCc- -3'
miRNA:   3'- aaGGCG-GCAGCag-ACG------CGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 63324 0.72 0.349457
Target:  5'- cUCCGCguuucuggacuuaUGUCGUCgGCGCCG-CGCGAu -3'
miRNA:   3'- aAGGCG-------------GCAGCAGaCGCGGCgGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 70687 0.68 0.579167
Target:  5'- -aCCGaCGgCGUCUGCGCCGCaagcuGCGu -3'
miRNA:   3'- aaGGCgGCaGCAGACGCGGCGg----CGCu -5'
13973 3' -63.1 NC_003521.1 + 72442 0.67 0.654957
Target:  5'- -cUCGCCGUCGUCgucGCGaCUGUCGUc- -3'
miRNA:   3'- aaGGCGGCAGCAGa--CGC-GGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 74170 0.7 0.444345
Target:  5'- -gCCGCUGgcCGaCUGCGCCGCgGCGc -3'
miRNA:   3'- aaGGCGGCa-GCaGACGCGGCGgCGCu -5'
13973 3' -63.1 NC_003521.1 + 74599 0.67 0.654957
Target:  5'- gUCCcgcgGCCGgcgCGcCU-CGCCGCCGCGc -3'
miRNA:   3'- aAGG----CGGCa--GCaGAcGCGGCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 74732 0.7 0.457946
Target:  5'- cUCCuGCuCGUCGUCggucucccgacugGCGUCGCCGuCGAc -3'
miRNA:   3'- aAGG-CG-GCAGCAGa------------CGCGGCGGC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.