miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 3' -63.1 NC_003521.1 + 200 0.66 0.711302
Target:  5'- -aCCgGCCGgccCGcCgcaCGCCGCCGCGGa -3'
miRNA:   3'- aaGG-CGGCa--GCaGac-GCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 1379 0.67 0.645472
Target:  5'- -aCCGCUGUCcccgaGcCcGCGCUGCUGCGGa -3'
miRNA:   3'- aaGGCGGCAG-----CaGaCGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 1442 0.66 0.711302
Target:  5'- ---gGCCG-CGagCUGCGCCGCCgGUGGc -3'
miRNA:   3'- aaggCGGCaGCa-GACGCGGCGG-CGCU- -5'
13973 3' -63.1 NC_003521.1 + 1576 0.69 0.532661
Target:  5'- -cCCGCCGUCG-CUGCuGaCgGCCGUGc -3'
miRNA:   3'- aaGGCGGCAGCaGACG-C-GgCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 3654 0.74 0.302177
Target:  5'- -gCCGCCGcCGUCUGCcucgGCgGCCGgGAc -3'
miRNA:   3'- aaGGCGGCaGCAGACG----CGgCGGCgCU- -5'
13973 3' -63.1 NC_003521.1 + 3759 0.69 0.541867
Target:  5'- -aCCGCCGcaugcUCGgacacaUGCGUCGUCGCGGc -3'
miRNA:   3'- aaGGCGGC-----AGCag----ACGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 5886 0.69 0.5054
Target:  5'- -gCCGUCGUCGUCcuCGCUGCUGCu- -3'
miRNA:   3'- aaGGCGGCAGCAGacGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 6878 0.74 0.277103
Target:  5'- aUCCGUCGUCGUCgUGguuauccuCGCCGUCGCGc -3'
miRNA:   3'- aAGGCGGCAGCAG-AC--------GCGGCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 8463 0.73 0.308713
Target:  5'- cUCCGCU-UCG-CgGUGCCGCCGCGAc -3'
miRNA:   3'- aAGGCGGcAGCaGaCGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 11560 0.69 0.532661
Target:  5'- cUCCGgCGcCGUCgUGCGCCGgacuCUGCGGg -3'
miRNA:   3'- aAGGCgGCaGCAG-ACGCGGC----GGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 11839 0.68 0.588587
Target:  5'- -gCUGCCGguc-CUGCGCCGcCCGCGc -3'
miRNA:   3'- aaGGCGGCagcaGACGCGGC-GGCGCu -5'
13973 3' -63.1 NC_003521.1 + 17455 0.66 0.711302
Target:  5'- -gCCGCgaUGUCG-CUGCugaccaagGCCGCCGcCGAg -3'
miRNA:   3'- aaGGCG--GCAGCaGACG--------CGGCGGC-GCU- -5'
13973 3' -63.1 NC_003521.1 + 22122 0.7 0.45282
Target:  5'- -gCCGCCGcCGUCUccuccgccuuCGCCGCCGCc- -3'
miRNA:   3'- aaGGCGGCaGCAGAc---------GCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 22730 0.69 0.532661
Target:  5'- --aCGCCcucaUCGUCaccgGCGCCGCCGCc- -3'
miRNA:   3'- aagGCGGc---AGCAGa---CGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 25164 0.67 0.664428
Target:  5'- gUCgCGCUuUCG-CUGCucCCGCCGCGAc -3'
miRNA:   3'- aAG-GCGGcAGCaGACGc-GGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 26008 0.68 0.598033
Target:  5'- -aCCGCCGUCG-CcGCGCCcggcGCC-CGAc -3'
miRNA:   3'- aaGGCGGCAGCaGaCGCGG----CGGcGCU- -5'
13973 3' -63.1 NC_003521.1 + 29699 0.67 0.616985
Target:  5'- aUCCGCUG-CGUCcucgGCGCCugGCUGCuGAg -3'
miRNA:   3'- aAGGCGGCaGCAGa---CGCGG--CGGCG-CU- -5'
13973 3' -63.1 NC_003521.1 + 30841 0.7 0.470028
Target:  5'- --aCGCUGguggcCGUCUGgGCCGuCCGCGGc -3'
miRNA:   3'- aagGCGGCa----GCAGACgCGGC-GGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 40522 0.66 0.711302
Target:  5'- -aCCgGCCGgccCGcCgcaCGCCGCCGCGGa -3'
miRNA:   3'- aaGG-CGGCa--GCaGac-GCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 43338 0.66 0.720532
Target:  5'- cUCCG-CGcCGUCcgGC-CCGCCGCGc -3'
miRNA:   3'- aAGGCgGCaGCAGa-CGcGGCGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.