Results 1 - 20 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 201669 | 0.66 | 0.711302 |
Target: 5'- ---gGCCG-CGagCUGCGCCGCCgGUGGc -3' miRNA: 3'- aaggCGGCaGCa-GACGCGGCGG-CGCU- -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 62560 | 0.66 | 0.729697 |
Target: 5'- -aCCGCaCGUCGcaaUGCagcaacGCCGCCGCc- -3' miRNA: 3'- aaGGCG-GCAGCag-ACG------CGGCGGCGcu -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 225874 | 0.66 | 0.70015 |
Target: 5'- --gUGCCGgugcuccaugcgCGUCUgGCGCUGCCGCu- -3' miRNA: 3'- aagGCGGCa-----------GCAGA-CGCGGCGGCGcu -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 194549 | 0.66 | 0.692676 |
Target: 5'- gUCUGCCG-CGUCggGCGCC-UCGuCGAa -3' miRNA: 3'- aAGGCGGCaGCAGa-CGCGGcGGC-GCU- -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 195846 | 0.66 | 0.702014 |
Target: 5'- -cCCGCCucuggCGUCaGCGCUGUCGCc- -3' miRNA: 3'- aaGGCGGca---GCAGaCGCGGCGGCGcu -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 54148 | 0.66 | 0.711302 |
Target: 5'- -aCCGCCGgCGUUggaGagGCCGCCGCc- -3' miRNA: 3'- aaGGCGGCaGCAGa--Cg-CGGCGGCGcu -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 227974 | 0.66 | 0.692676 |
Target: 5'- -aCCGCUG-CGUCUGCuCgCGCaCGUGAu -3' miRNA: 3'- aaGGCGGCaGCAGACGcG-GCG-GCGCU- -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 117408 | 0.66 | 0.702014 |
Target: 5'- -cCCGCCGUCG---GUGCCGugcCCGCGu -3' miRNA: 3'- aaGGCGGCAGCagaCGCGGC---GGCGCu -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 167575 | 0.66 | 0.711302 |
Target: 5'- --gCGCuCGUCGUCa-CGCCGCUGCu- -3' miRNA: 3'- aagGCG-GCAGCAGacGCGGCGGCGcu -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 192167 | 0.66 | 0.702014 |
Target: 5'- gUCUGCgGU-GUCaGCGCCGgUCGCGGc -3' miRNA: 3'- aAGGCGgCAgCAGaCGCGGC-GGCGCU- -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 183645 | 0.66 | 0.729697 |
Target: 5'- cUgCGCCGcuUCGUgCUGCgGCaCGCCGaCGAc -3' miRNA: 3'- aAgGCGGC--AGCA-GACG-CG-GCGGC-GCU- -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 163042 | 0.66 | 0.683294 |
Target: 5'- -cUCGCUGcuugaCGagUGCGCCuGCCGCGAc -3' miRNA: 3'- aaGGCGGCa----GCagACGCGG-CGGCGCU- -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 120604 | 0.66 | 0.729697 |
Target: 5'- cUCCuGCCGguagCGUCUGCGUUuugGCaGCGGg -3' miRNA: 3'- aAGG-CGGCa---GCAGACGCGG---CGgCGCU- -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 142358 | 0.66 | 0.729697 |
Target: 5'- -gCCGCCG-CGgc--CGCCGCCGCc- -3' miRNA: 3'- aaGGCGGCaGCagacGCGGCGGCGcu -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 200 | 0.66 | 0.711302 |
Target: 5'- -aCCgGCCGgccCGcCgcaCGCCGCCGCGGa -3' miRNA: 3'- aaGG-CGGCa--GCaGac-GCGGCGGCGCU- -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 214723 | 0.66 | 0.702014 |
Target: 5'- -aCCGCguCGUCuGUCUgggcuucggucaGCGCCGCCGUc- -3' miRNA: 3'- aaGGCG--GCAG-CAGA------------CGCGGCGGCGcu -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 240749 | 0.66 | 0.711302 |
Target: 5'- -aCCgGCCGgccCGcCgcaCGCCGCCGCGGa -3' miRNA: 3'- aaGG-CGGCa--GCaGac-GCGGCGGCGCU- -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 233839 | 0.66 | 0.729697 |
Target: 5'- -aCCGCCGUgucgugCGUCUGCGCguccUGUCGUccGAg -3' miRNA: 3'- aaGGCGGCA------GCAGACGCG----GCGGCG--CU- -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 90049 | 0.66 | 0.729697 |
Target: 5'- -cCCGcCCGUCGUC-GCGCgagCGCacaCGCGGg -3' miRNA: 3'- aaGGC-GGCAGCAGaCGCG---GCG---GCGCU- -5' |
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13973 | 3' | -63.1 | NC_003521.1 | + | 146417 | 0.66 | 0.711302 |
Target: 5'- -gCCGCCG-CGUCaaccUGCGCgGCUaCGAu -3' miRNA: 3'- aaGGCGGCaGCAG----ACGCGgCGGcGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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