miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 3' -63.1 NC_003521.1 + 74170 0.7 0.444345
Target:  5'- -gCCGCUGgcCGaCUGCGCCGCgGCGc -3'
miRNA:   3'- aaGGCGGCa-GCaGACGCGGCGgCGCu -5'
13973 3' -63.1 NC_003521.1 + 118910 0.73 0.322106
Target:  5'- -cUCGCCcUCGUCgGCGCCGCgGCGu -3'
miRNA:   3'- aaGGCGGcAGCAGaCGCGGCGgCGCu -5'
13973 3' -63.1 NC_003521.1 + 214806 0.73 0.328964
Target:  5'- -aCCGCCGUCGg--GCGCCgGgCGCGGc -3'
miRNA:   3'- aaGGCGGCAGCagaCGCGG-CgGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 142178 0.73 0.334527
Target:  5'- -cUCGCCGUCGUCgacgccgcuacCGCCGCCGCc- -3'
miRNA:   3'- aaGGCGGCAGCAGac---------GCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 233165 0.72 0.35018
Target:  5'- -aCCGCUGUCc---GCGCCGCCGUGGc -3'
miRNA:   3'- aaGGCGGCAGcagaCGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 77449 0.72 0.378422
Target:  5'- -gCCGCCGUUGgugcccgugacaCUGcCGCCGCCGCu- -3'
miRNA:   3'- aaGGCGGCAGCa-----------GAC-GCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 97453 0.72 0.37995
Target:  5'- cUUUCGaCCGUCGUCguUGCCGCCGCu- -3'
miRNA:   3'- -AAGGC-GGCAGCAGacGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 115235 0.71 0.427668
Target:  5'- gUUCCuCCGU-GUUgUGCGCCGCCGUGGu -3'
miRNA:   3'- -AAGGcGGCAgCAG-ACGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 148888 0.71 0.435961
Target:  5'- cUCgGCCGUgGcCgacgccgaggaGCGCCGCCGCGGc -3'
miRNA:   3'- aAGgCGGCAgCaGa----------CGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 143170 0.73 0.315356
Target:  5'- -cCCGUgGggGUCggacccgGCGCCGCCGCGAa -3'
miRNA:   3'- aaGGCGgCagCAGa------CGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 105576 0.73 0.308713
Target:  5'- gUCCGCCGcCGUgUcGuCGCCGCCGCc- -3'
miRNA:   3'- aAGGCGGCaGCAgA-C-GCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 3654 0.74 0.302177
Target:  5'- -gCCGCCGcCGUCUGCcucgGCgGCCGgGAc -3'
miRNA:   3'- aaGGCGGCaGCAGACG----CGgCGGCgCU- -5'
13973 3' -63.1 NC_003521.1 + 117185 0.79 0.145713
Target:  5'- -cCCGCCGUCG-CUGcCGCCGCC-CGAg -3'
miRNA:   3'- aaGGCGGCAGCaGAC-GCGGCGGcGCU- -5'
13973 3' -63.1 NC_003521.1 + 130118 0.78 0.156479
Target:  5'- cUUCUGCCccugcGUCGUCggcgGCGCCGCCGCu- -3'
miRNA:   3'- -AAGGCGG-----CAGCAGa---CGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 154121 0.76 0.211828
Target:  5'- -aCCGCC-UCGUC-GuCGCCGCCGCGGc -3'
miRNA:   3'- aaGGCGGcAGCAGaC-GCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 129584 0.76 0.211828
Target:  5'- cUCCGCCG-CG-CcGCGCCgGCCGCGAc -3'
miRNA:   3'- aAGGCGGCaGCaGaCGCGG-CGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 157225 0.75 0.253717
Target:  5'- -cCCGCCGUCaua--CGCCGCCGCGAg -3'
miRNA:   3'- aaGGCGGCAGcagacGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 223791 0.74 0.269319
Target:  5'- -aCCGCCGUgggccgccagacgaCGggcCUGCGCCGCCGCc- -3'
miRNA:   3'- aaGGCGGCA--------------GCa--GACGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 118307 0.74 0.277103
Target:  5'- -aCCGCCGcCGgcCUGCccGCCGCCGCGu -3'
miRNA:   3'- aaGGCGGCaGCa-GACG--CGGCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 57985 0.74 0.289427
Target:  5'- -gCUGCUGUUGUCaGCGCCGCCgaucGCGGa -3'
miRNA:   3'- aaGGCGGCAGCAGaCGCGGCGG----CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.