miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 3' -63.1 NC_003521.1 + 208178 1.06 0.001953
Target:  5'- uUUCCGCCGUCGUCUGCGCCGCCGCGAu -3'
miRNA:   3'- -AAGGCGGCAGCAGACGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 126944 0.83 0.071781
Target:  5'- -cCUGCUGUCG-CUGUGCCGCCGCGGa -3'
miRNA:   3'- aaGGCGGCAGCaGACGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 223359 0.79 0.138915
Target:  5'- --gUGCCGUCGUCUcuccuccgaGCGCUGCCGCGGu -3'
miRNA:   3'- aagGCGGCAGCAGA---------CGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 117185 0.79 0.145713
Target:  5'- -cCCGCCGUCG-CUGcCGCCGCC-CGAg -3'
miRNA:   3'- aaGGCGGCAGCaGAC-GCGGCGGcGCU- -5'
13973 3' -63.1 NC_003521.1 + 130118 0.78 0.156479
Target:  5'- cUUCUGCCccugcGUCGUCggcgGCGCCGCCGCu- -3'
miRNA:   3'- -AAGGCGG-----CAGCAGa---CGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 111279 0.78 0.160225
Target:  5'- -cCCGCCGU-GcCaGCGCCGCCGCGAu -3'
miRNA:   3'- aaGGCGGCAgCaGaCGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 95245 0.77 0.188776
Target:  5'- -gCCGCCG-CGUC-GUGCCGCCGCa- -3'
miRNA:   3'- aaGGCGGCaGCAGaCGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 154121 0.76 0.211828
Target:  5'- -aCCGCC-UCGUC-GuCGCCGCCGCGGc -3'
miRNA:   3'- aaGGCGGcAGCAGaC-GCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 129584 0.76 0.211828
Target:  5'- cUCCGCCG-CG-CcGCGCCgGCCGCGAc -3'
miRNA:   3'- aAGGCGGCaGCaGaCGCGG-CGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 98155 0.76 0.225768
Target:  5'- -gCCGCCGUCGcugcugacggcgCUGCGCCGaCCGCuGAg -3'
miRNA:   3'- aaGGCGGCAGCa-----------GACGCGGC-GGCG-CU- -5'
13973 3' -63.1 NC_003521.1 + 139322 0.75 0.248129
Target:  5'- gUCgGCCG-CGUCUG-GCCGCCGCu- -3'
miRNA:   3'- aAGgCGGCaGCAGACgCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 157225 0.75 0.253717
Target:  5'- -cCCGCCGUCaua--CGCCGCCGCGAg -3'
miRNA:   3'- aaGGCGGCAGcagacGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 205046 0.75 0.253717
Target:  5'- aUCCGUuuCGUcCGUCUGCGCaCGCUGUGGa -3'
miRNA:   3'- aAGGCG--GCA-GCAGACGCG-GCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 160349 0.74 0.265201
Target:  5'- cUCCGUCGUCGaggGCGUCGCCGCc- -3'
miRNA:   3'- aAGGCGGCAGCagaCGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 223791 0.74 0.269319
Target:  5'- -aCCGCCGUgggccgccagacgaCGggcCUGCGCCGCCGCc- -3'
miRNA:   3'- aaGGCGGCA--------------GCa--GACGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 118307 0.74 0.277103
Target:  5'- -aCCGCCGcCGgcCUGCccGCCGCCGCGu -3'
miRNA:   3'- aaGGCGGCaGCa-GACG--CGGCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 6878 0.74 0.277103
Target:  5'- aUCCGUCGUCGUCgUGguuauccuCGCCGUCGCGc -3'
miRNA:   3'- aAGGCGGCAGCAG-AC--------GCGGCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 177800 0.74 0.283212
Target:  5'- gUCCGCUGgugggCGUCguggGCGCCGCCGg-- -3'
miRNA:   3'- aAGGCGGCa----GCAGa---CGCGGCGGCgcu -5'
13973 3' -63.1 NC_003521.1 + 57985 0.74 0.289427
Target:  5'- -gCUGCUGUUGUCaGCGCCGCCgaucGCGGa -3'
miRNA:   3'- aaGGCGGCAGCAGaCGCGGCGG----CGCU- -5'
13973 3' -63.1 NC_003521.1 + 3654 0.74 0.302177
Target:  5'- -gCCGCCGcCGUCUGCcucgGCgGCCGgGAc -3'
miRNA:   3'- aaGGCGGCaGCAGACG----CGgCGGCgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.