Results 1 - 20 of 175 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 208178 | 1.06 | 0.001953 |
Target: 5'- uUUCCGCCGUCGUCUGCGCCGCCGCGAu -3' miRNA: 3'- -AAGGCGGCAGCAGACGCGGCGGCGCU- -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 48361 | 0.72 | 0.354538 |
Target: 5'- -aCCGCCGUCcuggaaaccgGCGCCGCCGCc- -3' miRNA: 3'- aaGGCGGCAGcaga------CGCGGCGGCGcu -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 148942 | 0.72 | 0.364855 |
Target: 5'- gUCCGuCCGUgGUCgcacCGCCGCCGCc- -3' miRNA: 3'- aAGGC-GGCAgCAGac--GCGGCGGCGcu -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 183645 | 0.66 | 0.729697 |
Target: 5'- cUgCGCCGcuUCGUgCUGCgGCaCGCCGaCGAc -3' miRNA: 3'- aAgGCGGC--AGCA-GACG-CG-GCGGC-GCU- -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 98155 | 0.76 | 0.225768 |
Target: 5'- -gCCGCCGUCGcugcugacggcgCUGCGCCGaCCGCuGAg -3' miRNA: 3'- aaGGCGGCAGCa-----------GACGCGGC-GGCG-CU- -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 139322 | 0.75 | 0.248129 |
Target: 5'- gUCgGCCG-CGUCUG-GCCGCCGCu- -3' miRNA: 3'- aAGgCGGCaGCAGACgCGGCGGCGcu -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 160349 | 0.74 | 0.265201 |
Target: 5'- cUCCGUCGUCGaggGCGUCGCCGCc- -3' miRNA: 3'- aAGGCGGCAGCagaCGCGGCGGCGcu -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 6878 | 0.74 | 0.277103 |
Target: 5'- aUCCGUCGUCGUCgUGguuauccuCGCCGUCGCGc -3' miRNA: 3'- aAGGCGGCAGCAG-AC--------GCGGCGGCGCu -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 8463 | 0.73 | 0.308713 |
Target: 5'- cUCCGCU-UCG-CgGUGCCGCCGCGAc -3' miRNA: 3'- aAGGCGGcAGCaGaCGCGGCGGCGCU- -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 63324 | 0.72 | 0.349457 |
Target: 5'- cUCCGCguuucuggacuuaUGUCGUCgGCGCCG-CGCGAu -3' miRNA: 3'- aAGGCG-------------GCAGCAGaCGCGGCgGCGCU- -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 84741 | 0.73 | 0.328274 |
Target: 5'- -gCCGUCGUCGUCUugcucggGCGCgGCgGCGGc -3' miRNA: 3'- aaGGCGGCAGCAGA-------CGCGgCGgCGCU- -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 77068 | 0.74 | 0.302177 |
Target: 5'- -gCCGCCGcCGUgaGCGCCGCUGUu- -3' miRNA: 3'- aaGGCGGCaGCAgaCGCGGCGGCGcu -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 223359 | 0.79 | 0.138915 |
Target: 5'- --gUGCCGUCGUCUcuccuccgaGCGCUGCCGCGGu -3' miRNA: 3'- aagGCGGCAGCAGA---------CGCGGCGGCGCU- -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 44152 | 0.73 | 0.334527 |
Target: 5'- --aCGCCGUCGUCgagcagcagcugGCGCCGucgguacuCCGCGAg -3' miRNA: 3'- aagGCGGCAGCAGa-----------CGCGGC--------GGCGCU- -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 111279 | 0.78 | 0.160225 |
Target: 5'- -cCCGCCGU-GcCaGCGCCGCCGCGAu -3' miRNA: 3'- aaGGCGGCAgCaGaCGCGGCGGCGCU- -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 177800 | 0.74 | 0.283212 |
Target: 5'- gUCCGCUGgugggCGUCguggGCGCCGCCGg-- -3' miRNA: 3'- aAGGCGGCa----GCAGa---CGCGGCGGCgcu -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 171629 | 0.72 | 0.347296 |
Target: 5'- -gCCGCCGaCGUCggguaugucuagcGCGCCGCgGCGGg -3' miRNA: 3'- aaGGCGGCaGCAGa------------CGCGGCGgCGCU- -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 212849 | 0.72 | 0.357465 |
Target: 5'- -gCCGCCGUggcCGUgaGCGCCGCCugGCGu -3' miRNA: 3'- aaGGCGGCA---GCAgaCGCGGCGG--CGCu -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 95245 | 0.77 | 0.188776 |
Target: 5'- -gCCGCCG-CGUC-GUGCCGCCGCa- -3' miRNA: 3'- aaGGCGGCaGCAGaCGCGGCGGCGcu -5' |
|||||||
13973 | 3' | -63.1 | NC_003521.1 | + | 205046 | 0.75 | 0.253717 |
Target: 5'- aUCCGUuuCGUcCGUCUGCGCaCGCUGUGGa -3' miRNA: 3'- aAGGCG--GCA-GCAGACGCG-GCGGCGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home