miRNA display CGI


Results 1 - 20 of 175 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 3' -63.1 NC_003521.1 + 240749 0.66 0.711302
Target:  5'- -aCCgGCCGgccCGcCgcaCGCCGCCGCGGa -3'
miRNA:   3'- aaGG-CGGCa--GCaGac-GCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 236534 0.67 0.626479
Target:  5'- cUCUGCCuuGUCGUCguucgGCGUCGCuCGuCGGc -3'
miRNA:   3'- aAGGCGG--CAGCAGa----CGCGGCG-GC-GCU- -5'
13973 3' -63.1 NC_003521.1 + 234434 0.68 0.598033
Target:  5'- -gCCGCCG-CGguagCUGCGgCGCCccuccGCGAc -3'
miRNA:   3'- aaGGCGGCaGCa---GACGCgGCGG-----CGCU- -5'
13973 3' -63.1 NC_003521.1 + 233839 0.66 0.729697
Target:  5'- -aCCGCCGUgucgugCGUCUGCGCguccUGUCGUccGAg -3'
miRNA:   3'- aaGGCGGCA------GCAGACGCG----GCGGCG--CU- -5'
13973 3' -63.1 NC_003521.1 + 233165 0.72 0.35018
Target:  5'- -aCCGCUGUCc---GCGCCGCCGUGGc -3'
miRNA:   3'- aaGGCGGCAGcagaCGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 233062 0.7 0.486678
Target:  5'- gUCUGCgG-CGUCUGCugggacuGCCGCCGCc- -3'
miRNA:   3'- aAGGCGgCaGCAGACG-------CGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 228237 0.66 0.711302
Target:  5'- --aCGCUgGUCGUgguggGUGCCGCCGUGGu -3'
miRNA:   3'- aagGCGG-CAGCAga---CGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 227974 0.66 0.692676
Target:  5'- -aCCGCUG-CGUCUGCuCgCGCaCGUGAu -3'
miRNA:   3'- aaGGCGGCaGCAGACGcG-GCG-GCGCU- -5'
13973 3' -63.1 NC_003521.1 + 226365 0.69 0.541867
Target:  5'- -gCCGCgGgagCGgcggCUGaCGCCGCCGCa- -3'
miRNA:   3'- aaGGCGgCa--GCa---GAC-GCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 225874 0.66 0.70015
Target:  5'- --gUGCCGgugcuccaugcgCGUCUgGCGCUGCCGCu- -3'
miRNA:   3'- aagGCGGCa-----------GCAGA-CGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 223791 0.74 0.269319
Target:  5'- -aCCGCCGUgggccgccagacgaCGggcCUGCGCCGCCGCc- -3'
miRNA:   3'- aaGGCGGCA--------------GCa--GACGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 223448 0.67 0.673875
Target:  5'- ---aGCgGUCccucucgaGUCUGgGCCGCCGCGc -3'
miRNA:   3'- aaggCGgCAG--------CAGACgCGGCGGCGCu -5'
13973 3' -63.1 NC_003521.1 + 223359 0.79 0.138915
Target:  5'- --gUGCCGUCGUCUcuccuccgaGCGCUGCCGCGGu -3'
miRNA:   3'- aagGCGGCAGCAGA---------CGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 214815 0.66 0.720532
Target:  5'- uUUCUGCacauggGUCUGCGgCGCUGCGGc -3'
miRNA:   3'- -AAGGCGgcag--CAGACGCgGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 214806 0.73 0.328964
Target:  5'- -aCCGCCGUCGg--GCGCCgGgCGCGGc -3'
miRNA:   3'- aaGGCGGCAGCagaCGCGG-CgGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 214723 0.66 0.702014
Target:  5'- -aCCGCguCGUCuGUCUgggcuucggucaGCGCCGCCGUc- -3'
miRNA:   3'- aaGGCG--GCAG-CAGA------------CGCGGCGGCGcu -5'
13973 3' -63.1 NC_003521.1 + 212849 0.72 0.357465
Target:  5'- -gCCGCCGUggcCGUgaGCGCCGCCugGCGu -3'
miRNA:   3'- aaGGCGGCA---GCAgaCGCGGCGG--CGCu -5'
13973 3' -63.1 NC_003521.1 + 208178 1.06 0.001953
Target:  5'- uUUCCGCCGUCGUCUGCGCCGCCGCGAu -3'
miRNA:   3'- -AAGGCGGCAGCAGACGCGGCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 205868 0.69 0.551126
Target:  5'- aUCUgGCCGaCcUCUGCGUgCGCCGCGAc -3'
miRNA:   3'- aAGG-CGGCaGcAGACGCG-GCGGCGCU- -5'
13973 3' -63.1 NC_003521.1 + 205046 0.75 0.253717
Target:  5'- aUCCGUuuCGUcCGUCUGCGCaCGCUGUGGa -3'
miRNA:   3'- aAGGCG--GCA-GCAGACGCG-GCGGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.