miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 5' -55.2 NC_003521.1 + 197546 0.66 0.953673
Target:  5'- aGCAGgCuGUucUGCAGGUAguGACGCa- -3'
miRNA:   3'- aCGUC-GuCA--GCGUCCAUguCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 90457 0.66 0.953673
Target:  5'- aGUAGCAGUCGaccacGGUccgcacGCAGACcucgGCCGa -3'
miRNA:   3'- aCGUCGUCAGCgu---CCA------UGUCUG----UGGU- -5'
13973 5' -55.2 NC_003521.1 + 218166 0.66 0.953673
Target:  5'- aGCAGCAGguaGUAGGUgACGacGAC-CCAg -3'
miRNA:   3'- aCGUCGUCag-CGUCCA-UGU--CUGuGGU- -5'
13973 5' -55.2 NC_003521.1 + 202702 0.66 0.953673
Target:  5'- aGCuGCAGU---GGGUACGG-CACCAa -3'
miRNA:   3'- aCGuCGUCAgcgUCCAUGUCuGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 53419 0.66 0.953673
Target:  5'- cGuCGGCAgGUCGgcaAGGUGCGGAgGCUg -3'
miRNA:   3'- aC-GUCGU-CAGCg--UCCAUGUCUgUGGu -5'
13973 5' -55.2 NC_003521.1 + 142867 0.66 0.952488
Target:  5'- cUGCucAGCAGUCGCAGcagcgGCGaucccuuggagagcGGCGCCAu -3'
miRNA:   3'- -ACG--UCGUCAGCGUCca---UGU--------------CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 77719 0.67 0.949645
Target:  5'- gGCGGUGGUCGU-GGcGCuGGCGCCc -3'
miRNA:   3'- aCGUCGUCAGCGuCCaUGuCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 96893 0.67 0.949645
Target:  5'- gUGCgAGCAGUUGgGGaUGCGGcGCGCCGu -3'
miRNA:   3'- -ACG-UCGUCAGCgUCcAUGUC-UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 104167 0.67 0.949645
Target:  5'- gGCGGCGG-CGCGGGUcGCAcGGCGuuGc -3'
miRNA:   3'- aCGUCGUCaGCGUCCA-UGU-CUGUggU- -5'
13973 5' -55.2 NC_003521.1 + 123184 0.67 0.949645
Target:  5'- gGCGGCGGgggacCGUAGGccGCAuacGGCGCCGg -3'
miRNA:   3'- aCGUCGUCa----GCGUCCa-UGU---CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 91466 0.67 0.949645
Target:  5'- cGCAGaCAGgugCGCAGGaaGCAGACcUCGc -3'
miRNA:   3'- aCGUC-GUCa--GCGUCCa-UGUCUGuGGU- -5'
13973 5' -55.2 NC_003521.1 + 55563 0.67 0.949645
Target:  5'- aGUAGCAcUCGC-GGUugaGCGGACACa- -3'
miRNA:   3'- aCGUCGUcAGCGuCCA---UGUCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 220507 0.67 0.949645
Target:  5'- aGCAGCAG-CGUGguggccuccuGGUGCugcauGGCGCCGg -3'
miRNA:   3'- aCGUCGUCaGCGU----------CCAUGu----CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 101819 0.67 0.949645
Target:  5'- gGgGGCGGUCGC-GGUAggccuCGGGCACg- -3'
miRNA:   3'- aCgUCGUCAGCGuCCAU-----GUCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 116878 0.67 0.949645
Target:  5'- cGCAGUGG-CGCGGcUGCGGcggcGCGCCGg -3'
miRNA:   3'- aCGUCGUCaGCGUCcAUGUC----UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 163038 0.67 0.949645
Target:  5'- -aCGGCAGUCuGCAGGUcaccuacguGCGG-CACUAc -3'
miRNA:   3'- acGUCGUCAG-CGUCCA---------UGUCuGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 216029 0.67 0.949645
Target:  5'- cGCAGggcccagggcCAGUCGCGGGUAaAGACGa-- -3'
miRNA:   3'- aCGUC----------GUCAGCGUCCAUgUCUGUggu -5'
13973 5' -55.2 NC_003521.1 + 140014 0.67 0.94923
Target:  5'- aGUGGUAGUCGC-GGUagcggccGCAGAagGCCAu -3'
miRNA:   3'- aCGUCGUCAGCGuCCA-------UGUCUg-UGGU- -5'
13973 5' -55.2 NC_003521.1 + 215373 0.67 0.94539
Target:  5'- cGCAGUAGagGCAGaGgacgGCcaggaaGGGCACCAg -3'
miRNA:   3'- aCGUCGUCagCGUC-Ca---UG------UCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 169607 0.67 0.94539
Target:  5'- gUGCcGCGGUUGUAGGggacgagGCGGAUGCgAa -3'
miRNA:   3'- -ACGuCGUCAGCGUCCa------UGUCUGUGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.