miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 5' -55.2 NC_003521.1 + 7806 0.66 0.961064
Target:  5'- -aCGGCGuGUCG-GGGUGCAGaACGCCu -3'
miRNA:   3'- acGUCGU-CAGCgUCCAUGUC-UGUGGu -5'
13973 5' -55.2 NC_003521.1 + 123548 0.66 0.961064
Target:  5'- cGU--CAGUUcggGCAGGUGCAG-CGCCAg -3'
miRNA:   3'- aCGucGUCAG---CGUCCAUGUCuGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 102293 0.66 0.961064
Target:  5'- cGCGGCaagaAGUCG-AGGUGCgccGGAC-CCAg -3'
miRNA:   3'- aCGUCG----UCAGCgUCCAUG---UCUGuGGU- -5'
13973 5' -55.2 NC_003521.1 + 100171 0.66 0.961064
Target:  5'- --aAGCGGUCGUAGGg--AGACACg- -3'
miRNA:   3'- acgUCGUCAGCGUCCaugUCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 141964 0.66 0.961064
Target:  5'- aGCGGCGGUaGCA-GUACcaACACCAc -3'
miRNA:   3'- aCGUCGUCAgCGUcCAUGucUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 32129 0.66 0.961064
Target:  5'- --gGGCAGguaGCGGGcGCGGuGCACCAa -3'
miRNA:   3'- acgUCGUCag-CGUCCaUGUC-UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 146371 0.66 0.961064
Target:  5'- cGgGGCGGUUcCGGGUACAGGgAUCc -3'
miRNA:   3'- aCgUCGUCAGcGUCCAUGUCUgUGGu -5'
13973 5' -55.2 NC_003521.1 + 222684 0.66 0.960715
Target:  5'- aGCAGCGGcUCGaccucggugcggcCGGGcgUGCGGAuCACCAg -3'
miRNA:   3'- aCGUCGUC-AGC-------------GUCC--AUGUCU-GUGGU- -5'
13973 5' -55.2 NC_003521.1 + 4372 0.66 0.958938
Target:  5'- uUGCGGCcgagcagguuccagaAGcUC-CAGGUGCAGACcCCGg -3'
miRNA:   3'- -ACGUCG---------------UC-AGcGUCCAUGUCUGuGGU- -5'
13973 5' -55.2 NC_003521.1 + 162876 0.66 0.958938
Target:  5'- cGCAGgGGcgcgCGCAGGUgggccgcuacugccuGCAGgACGCCc -3'
miRNA:   3'- aCGUCgUCa---GCGUCCA---------------UGUC-UGUGGu -5'
13973 5' -55.2 NC_003521.1 + 188021 0.66 0.957478
Target:  5'- cGUgaaGGCGGUC-CAGGUGgAGccGCACCGc -3'
miRNA:   3'- aCG---UCGUCAGcGUCCAUgUC--UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 60012 0.66 0.957478
Target:  5'- cUGCAGCAG-CGCG---ACAG-CACCGg -3'
miRNA:   3'- -ACGUCGUCaGCGUccaUGUCuGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 154643 0.66 0.957478
Target:  5'- cGUGGCccgcgAGUCGCuGGUGC--GCACCGu -3'
miRNA:   3'- aCGUCG-----UCAGCGuCCAUGucUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 68140 0.66 0.957478
Target:  5'- aGCAGUgcugguaucAGgCGCAGGUGCuGcgucuGCGCCAg -3'
miRNA:   3'- aCGUCG---------UCaGCGUCCAUGuC-----UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 56971 0.66 0.957478
Target:  5'- aGCGGUAGaugCGCGaGUGCAGGCucuCCu -3'
miRNA:   3'- aCGUCGUCa--GCGUcCAUGUCUGu--GGu -5'
13973 5' -55.2 NC_003521.1 + 214573 0.66 0.957478
Target:  5'- aGCAGCAGgggCGagGGGUcCuccuGGCACCGg -3'
miRNA:   3'- aCGUCGUCa--GCg-UCCAuGu---CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 17458 0.66 0.957478
Target:  5'- cGCGGCAGcgcUCGgAGGagagACGacGGCACCGg -3'
miRNA:   3'- aCGUCGUC---AGCgUCCa---UGU--CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 180847 0.66 0.957478
Target:  5'- uUGCAcGUAGcCGCGGGUcagGCGGGCGuuGu -3'
miRNA:   3'- -ACGU-CGUCaGCGUCCA---UGUCUGUggU- -5'
13973 5' -55.2 NC_003521.1 + 64220 0.66 0.95636
Target:  5'- cGCAGCAGcgCGaggacgugcucaucCAGGUACAGG-ACCu -3'
miRNA:   3'- aCGUCGUCa-GC--------------GUCCAUGUCUgUGGu -5'
13973 5' -55.2 NC_003521.1 + 197546 0.66 0.953673
Target:  5'- aGCAGgCuGUucUGCAGGUAguGACGCa- -3'
miRNA:   3'- aCGUC-GuCA--GCGUCCAUguCUGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.