Results 21 - 40 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13973 | 5' | -55.2 | NC_003521.1 | + | 142867 | 0.66 | 0.952488 |
Target: 5'- cUGCucAGCAGUCGCAGcagcgGCGaucccuuggagagcGGCGCCAu -3' miRNA: 3'- -ACG--UCGUCAGCGUCca---UGU--------------CUGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 218166 | 0.66 | 0.953673 |
Target: 5'- aGCAGCAGguaGUAGGUgACGacGAC-CCAg -3' miRNA: 3'- aCGUCGUCag-CGUCCA-UGU--CUGuGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 141964 | 0.66 | 0.961064 |
Target: 5'- aGCGGCGGUaGCA-GUACcaACACCAc -3' miRNA: 3'- aCGUCGUCAgCGUcCAUGucUGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 154643 | 0.66 | 0.957478 |
Target: 5'- cGUGGCccgcgAGUCGCuGGUGC--GCACCGu -3' miRNA: 3'- aCGUCG-----UCAGCGuCCAUGucUGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 222684 | 0.66 | 0.960715 |
Target: 5'- aGCAGCGGcUCGaccucggugcggcCGGGcgUGCGGAuCACCAg -3' miRNA: 3'- aCGUCGUC-AGC-------------GUCC--AUGUCU-GUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 60012 | 0.66 | 0.957478 |
Target: 5'- cUGCAGCAG-CGCG---ACAG-CACCGg -3' miRNA: 3'- -ACGUCGUCaGCGUccaUGUCuGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 32129 | 0.66 | 0.961064 |
Target: 5'- --gGGCAGguaGCGGGcGCGGuGCACCAa -3' miRNA: 3'- acgUCGUCag-CGUCCaUGUC-UGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 7806 | 0.66 | 0.961064 |
Target: 5'- -aCGGCGuGUCG-GGGUGCAGaACGCCu -3' miRNA: 3'- acGUCGU-CAGCgUCCAUGUC-UGUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 168372 | 0.66 | 0.964435 |
Target: 5'- aGCGGCAGUCGgCGGGca-GGAUguagguggcguuGCCGc -3' miRNA: 3'- aCGUCGUCAGC-GUCCaugUCUG------------UGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 100171 | 0.66 | 0.961064 |
Target: 5'- --aAGCGGUCGUAGGg--AGACACg- -3' miRNA: 3'- acgUCGUCAGCGUCCaugUCUGUGgu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 218040 | 0.66 | 0.961064 |
Target: 5'- gGCGGCGGcgucCGCAGGUAgAuGAggucCACCGu -3' miRNA: 3'- aCGUCGUCa---GCGUCCAUgU-CU----GUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 79212 | 0.66 | 0.961064 |
Target: 5'- cGCAGCAcGUUGCccgAGGgcacCAGAUGCCc -3' miRNA: 3'- aCGUCGU-CAGCG---UCCau--GUCUGUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 64220 | 0.66 | 0.95636 |
Target: 5'- cGCAGCAGcgCGaggacgugcucaucCAGGUACAGG-ACCu -3' miRNA: 3'- aCGUCGUCa-GC--------------GUCCAUGUCUgUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 68140 | 0.66 | 0.957478 |
Target: 5'- aGCAGUgcugguaucAGgCGCAGGUGCuGcgucuGCGCCAg -3' miRNA: 3'- aCGUCG---------UCaGCGUCCAUGuC-----UGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 150675 | 0.66 | 0.967595 |
Target: 5'- gGCGGCGG-CGCcgcugcugcuGGGUGCuGcuGCGCCGg -3' miRNA: 3'- aCGUCGUCaGCG----------UCCAUGuC--UGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 197546 | 0.66 | 0.953673 |
Target: 5'- aGCAGgCuGUucUGCAGGUAguGACGCa- -3' miRNA: 3'- aCGUC-GuCA--GCGUCCAUguCUGUGgu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 188021 | 0.66 | 0.957478 |
Target: 5'- cGUgaaGGCGGUC-CAGGUGgAGccGCACCGc -3' miRNA: 3'- aCG---UCGUCAGcGUCCAUgUC--UGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 4372 | 0.66 | 0.958938 |
Target: 5'- uUGCGGCcgagcagguuccagaAGcUC-CAGGUGCAGACcCCGg -3' miRNA: 3'- -ACGUCG---------------UC-AGcGUCCAUGUCUGuGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 180847 | 0.66 | 0.957478 |
Target: 5'- uUGCAcGUAGcCGCGGGUcagGCGGGCGuuGu -3' miRNA: 3'- -ACGU-CGUCaGCGUCCA---UGUCUGUggU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 214573 | 0.66 | 0.957478 |
Target: 5'- aGCAGCAGgggCGagGGGUcCuccuGGCACCGg -3' miRNA: 3'- aCGUCGUCa--GCg-UCCAuGu---CUGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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