miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 5' -55.2 NC_003521.1 + 38571 0.67 0.940906
Target:  5'- aGCAGCggacgAGUUGUGGG-GCGcGACGCCGu -3'
miRNA:   3'- aCGUCG-----UCAGCGUCCaUGU-CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 39002 0.68 0.914996
Target:  5'- gGUAGguGUCGaggccGGaGCGGGCGCCGc -3'
miRNA:   3'- aCGUCguCAGCgu---CCaUGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 39213 0.71 0.777362
Target:  5'- cGCAGCAG-CGCGGGcucggggacaGCGGugGCCc -3'
miRNA:   3'- aCGUCGUCaGCGUCCa---------UGUCugUGGu -5'
13973 5' -55.2 NC_003521.1 + 39531 0.68 0.909114
Target:  5'- cGCGGCgAGagcuggCGCAGGU-CGGugGCCc -3'
miRNA:   3'- aCGUCG-UCa-----GCGUCCAuGUCugUGGu -5'
13973 5' -55.2 NC_003521.1 + 40234 0.73 0.650225
Target:  5'- gGCAGCGGUCGCAGGcgccgccuccgGCAGcucACGCUu -3'
miRNA:   3'- aCGUCGUCAGCGUCCa----------UGUC---UGUGGu -5'
13973 5' -55.2 NC_003521.1 + 42001 0.69 0.890096
Target:  5'- cGCAGCAGcaacacgGCGGcacgACAGACGCCGc -3'
miRNA:   3'- aCGUCGUCag-----CGUCca--UGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 43818 0.67 0.940906
Target:  5'- cGCAGCAG-C-CGGGU-CAGcCGCCGc -3'
miRNA:   3'- aCGUCGUCaGcGUCCAuGUCuGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 44078 0.72 0.720175
Target:  5'- gGCAGCAGac---GGUGCAGGCGCCGc -3'
miRNA:   3'- aCGUCGUCagcguCCAUGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 46123 0.67 0.936191
Target:  5'- cGCAGCGuUCGCAGGg--AGGCAugucCCAg -3'
miRNA:   3'- aCGUCGUcAGCGUCCaugUCUGU----GGU- -5'
13973 5' -55.2 NC_003521.1 + 47118 0.67 0.926061
Target:  5'- cGUAgacGCAGUCGUggAGGUcaucguagcaAUAGACGCCGc -3'
miRNA:   3'- aCGU---CGUCAGCG--UCCA----------UGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 47653 0.67 0.926061
Target:  5'- gGCGGCAGcugcgcaacaGCAGcaGCAGACGCCc -3'
miRNA:   3'- aCGUCGUCag--------CGUCcaUGUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 49003 0.67 0.944952
Target:  5'- cGCAGgGcGUCGUAGGggGCAGuacagucACGCCGu -3'
miRNA:   3'- aCGUCgU-CAGCGUCCa-UGUC-------UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 49206 0.7 0.829983
Target:  5'- cGCAGCgAGUCGCgguccacgaAGGcgACGGGCAUCu -3'
miRNA:   3'- aCGUCG-UCAGCG---------UCCa-UGUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 50544 0.68 0.920645
Target:  5'- cGCGGCAGuaUCGCAGGcGgAGACGu-- -3'
miRNA:   3'- aCGUCGUC--AGCGUCCaUgUCUGUggu -5'
13973 5' -55.2 NC_003521.1 + 52062 0.68 0.903002
Target:  5'- aGCGGCAGaugaCGCGGGgcCGGuACACUu -3'
miRNA:   3'- aCGUCGUCa---GCGUCCauGUC-UGUGGu -5'
13973 5' -55.2 NC_003521.1 + 53399 0.72 0.739628
Target:  5'- cUGCAGCuccUUGCGGGcguCGGGCGCCAc -3'
miRNA:   3'- -ACGUCGuc-AGCGUCCau-GUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 53419 0.66 0.953673
Target:  5'- cGuCGGCAgGUCGgcaAGGUGCGGAgGCUg -3'
miRNA:   3'- aC-GUCGU-CAGCg--UCCAUGUCUgUGGu -5'
13973 5' -55.2 NC_003521.1 + 55563 0.67 0.949645
Target:  5'- aGUAGCAcUCGC-GGUugaGCGGACACa- -3'
miRNA:   3'- aCGUCGUcAGCGuCCA---UGUCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 56339 0.67 0.936191
Target:  5'- cGCGGCcG-CGCAGG-GCGcACACCAg -3'
miRNA:   3'- aCGUCGuCaGCGUCCaUGUcUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 56971 0.66 0.957478
Target:  5'- aGCGGUAGaugCGCGaGUGCAGGCucuCCu -3'
miRNA:   3'- aCGUCGUCa--GCGUcCAUGUCUGu--GGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.