miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 5' -55.2 NC_003521.1 + 1885 0.69 0.883308
Target:  5'- cGCAGCuGgCGCAGGUACcgGGACGg-- -3'
miRNA:   3'- aCGUCGuCaGCGUCCAUG--UCUGUggu -5'
13973 5' -55.2 NC_003521.1 + 2893 0.68 0.914996
Target:  5'- gGCAcCAGUCGCAaaaacgacguGGUACAacGACGCUg -3'
miRNA:   3'- aCGUcGUCAGCGU----------CCAUGU--CUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 4372 0.66 0.958938
Target:  5'- uUGCGGCcgagcagguuccagaAGcUC-CAGGUGCAGACcCCGg -3'
miRNA:   3'- -ACGUCG---------------UC-AGcGUCCAUGUCUGuGGU- -5'
13973 5' -55.2 NC_003521.1 + 5656 0.66 0.964435
Target:  5'- gGCGGCGGagGguGGggggucgagacACGGGCGCCc -3'
miRNA:   3'- aCGUCGUCagCguCCa----------UGUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 6493 0.67 0.936191
Target:  5'- gGCAGCGGagGCGGuGacgGCAGAggcuCACCGg -3'
miRNA:   3'- aCGUCGUCagCGUC-Ca--UGUCU----GUGGU- -5'
13973 5' -55.2 NC_003521.1 + 7569 0.67 0.94539
Target:  5'- --gAGCAG-CGUGGGUACGGugACgAg -3'
miRNA:   3'- acgUCGUCaGCGUCCAUGUCugUGgU- -5'
13973 5' -55.2 NC_003521.1 + 7759 0.71 0.758714
Target:  5'- gGCGGCAGUCcCA---GCAGACGCCGc -3'
miRNA:   3'- aCGUCGUCAGcGUccaUGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 7806 0.66 0.961064
Target:  5'- -aCGGCGuGUCG-GGGUGCAGaACGCCu -3'
miRNA:   3'- acGUCGU-CAGCgUCCAUGUC-UGUGGu -5'
13973 5' -55.2 NC_003521.1 + 12866 0.69 0.890096
Target:  5'- cGCAGCGGUacgggccuuccCGCAGGU----ACACCAu -3'
miRNA:   3'- aCGUCGUCA-----------GCGUCCAugucUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 15346 0.72 0.719194
Target:  5'- gUGCAGCAGUCGCGacuGGUGacguacuCGGAC-CCu -3'
miRNA:   3'- -ACGUCGUCAGCGU---CCAU-------GUCUGuGGu -5'
13973 5' -55.2 NC_003521.1 + 16983 0.85 0.165187
Target:  5'- aGCAGCAGcCGCAGGgacaGCAGGCGCCc -3'
miRNA:   3'- aCGUCGUCaGCGUCCa---UGUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 17458 0.66 0.957478
Target:  5'- cGCGGCAGcgcUCGgAGGagagACGacGGCACCGg -3'
miRNA:   3'- aCGUCGUC---AGCgUCCa---UGU--CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 30931 0.67 0.940906
Target:  5'- cUGgGGCAGUCGCcgugccguAGGUAgugccaagcCAGGCGCUc -3'
miRNA:   3'- -ACgUCGUCAGCG--------UCCAU---------GUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 31708 0.68 0.914996
Target:  5'- gGCGGCAGcaugUGCGcGUGCugGGACGCCGc -3'
miRNA:   3'- aCGUCGUCa---GCGUcCAUG--UCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 32129 0.66 0.961064
Target:  5'- --gGGCAGguaGCGGGcGCGGuGCACCAa -3'
miRNA:   3'- acgUCGUCag-CGUCCaUGUC-UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 34338 0.67 0.940906
Target:  5'- --aAGCGG-CGCAGG-GCGGAgGCCGu -3'
miRNA:   3'- acgUCGUCaGCGUCCaUGUCUgUGGU- -5'
13973 5' -55.2 NC_003521.1 + 34503 0.67 0.936191
Target:  5'- aGCAGCgAG-CGCAGGUaGCGGcCGCgGg -3'
miRNA:   3'- aCGUCG-UCaGCGUCCA-UGUCuGUGgU- -5'
13973 5' -55.2 NC_003521.1 + 34923 0.68 0.909114
Target:  5'- cGCAGCAGUaGC-GGcGCAGAC-CCu -3'
miRNA:   3'- aCGUCGUCAgCGuCCaUGUCUGuGGu -5'
13973 5' -55.2 NC_003521.1 + 36728 0.67 0.936191
Target:  5'- cGCAGUGG-CGCcaccAGGUGCAcGugGCCc -3'
miRNA:   3'- aCGUCGUCaGCG----UCCAUGU-CugUGGu -5'
13973 5' -55.2 NC_003521.1 + 36967 0.68 0.903002
Target:  5'- cGCAGCGGa-GCGGGUGCucGGCGgCGa -3'
miRNA:   3'- aCGUCGUCagCGUCCAUGu-CUGUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.