miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 5' -55.2 NC_003521.1 + 239441 0.71 0.777362
Target:  5'- cGCAGCAG-CGCGGGcucggggacaGCGGugGCCc -3'
miRNA:   3'- aCGUCGUCaGCGUCCa---------UGUCugUGGu -5'
13973 5' -55.2 NC_003521.1 + 240462 0.73 0.650225
Target:  5'- gGCAGCGGUCGCAGGcgccgccuccgGCAGcucACGCUu -3'
miRNA:   3'- aCGUCGUCAGCGUCCa----------UGUC---UGUGGu -5'
13973 5' -55.2 NC_003521.1 + 147840 0.73 0.680455
Target:  5'- gUGCcguGCAGcCGgGGGUGCAGGCGCgAg -3'
miRNA:   3'- -ACGu--CGUCaGCgUCCAUGUCUGUGgU- -5'
13973 5' -55.2 NC_003521.1 + 53399 0.72 0.739628
Target:  5'- cUGCAGCuccUUGCGGGcguCGGGCGCCAc -3'
miRNA:   3'- -ACGUCGuc-AGCGUCCau-GUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 70018 0.72 0.739628
Target:  5'- cGCAGCGGUaC-CAGGUaacGCGGACACg- -3'
miRNA:   3'- aCGUCGUCA-GcGUCCA---UGUCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 117780 0.72 0.749221
Target:  5'- aGCAGCA--UGguGGcgGCGGACACCGu -3'
miRNA:   3'- aCGUCGUcaGCguCCa-UGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 88514 0.72 0.749221
Target:  5'- cGCAGCGacUCGCAGccGUGCAGGCGCa- -3'
miRNA:   3'- aCGUCGUc-AGCGUC--CAUGUCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 95637 0.71 0.768097
Target:  5'- aGCAGcCGGUCacgGCGGGUuCAGGCACgAa -3'
miRNA:   3'- aCGUC-GUCAG---CGUCCAuGUCUGUGgU- -5'
13973 5' -55.2 NC_003521.1 + 59653 0.71 0.777362
Target:  5'- gUGCGGCAGaCGCuggcgcgccuggAGGagcuCAGACGCCAg -3'
miRNA:   3'- -ACGUCGUCaGCG------------UCCau--GUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 101776 0.74 0.640109
Target:  5'- gUGCAGCAGguugCGCAGGUcaguUGGGCGCgCAc -3'
miRNA:   3'- -ACGUCGUCa---GCGUCCAu---GUCUGUG-GU- -5'
13973 5' -55.2 NC_003521.1 + 223969 0.74 0.619867
Target:  5'- aUGUAGCGGUCGUu-GU-CAGGCACCAc -3'
miRNA:   3'- -ACGUCGUCAGCGucCAuGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 234133 0.74 0.609756
Target:  5'- aGCAGCGcUCGCGGGcGCAGGC-CCu -3'
miRNA:   3'- aCGUCGUcAGCGUCCaUGUCUGuGGu -5'
13973 5' -55.2 NC_003521.1 + 128329 0.76 0.48212
Target:  5'- aGCcGCGGUCcucggGCAGGUACAGGC-CCAc -3'
miRNA:   3'- aCGuCGUCAG-----CGUCCAUGUCUGuGGU- -5'
13973 5' -55.2 NC_003521.1 + 75769 0.76 0.510629
Target:  5'- gGCAGaaaGGcCGCcuccAGGUGCAGACGCCGc -3'
miRNA:   3'- aCGUCg--UCaGCG----UCCAUGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 69404 0.75 0.569545
Target:  5'- cGCAGCAGaCGCGGG-ACGGugacggcgcGCACCAc -3'
miRNA:   3'- aCGUCGUCaGCGUCCaUGUC---------UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 69441 0.74 0.599661
Target:  5'- cGguGgAGUCGCAGGUGCgcgAGGCGCa- -3'
miRNA:   3'- aCguCgUCAGCGUCCAUG---UCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 232354 0.74 0.599661
Target:  5'- aGCAGCAGUCGCGGc----GGCACCGc -3'
miRNA:   3'- aCGUCGUCAGCGUCcauguCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 123184 0.74 0.599661
Target:  5'- cGCGgcGCAGUCGCAGGcggaAC-GACACCGg -3'
miRNA:   3'- aCGU--CGUCAGCGUCCa---UGuCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 166865 0.74 0.606726
Target:  5'- cGCGGCGGgCGCAGGUcguacaucaaguccGCGGGCGCgCGg -3'
miRNA:   3'- aCGUCGUCaGCGUCCA--------------UGUCUGUG-GU- -5'
13973 5' -55.2 NC_003521.1 + 216616 0.74 0.609756
Target:  5'- aGCAGCAGUCgacgguagGCGGGcGCGccGACGCCGg -3'
miRNA:   3'- aCGUCGUCAG--------CGUCCaUGU--CUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.