Results 1 - 20 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13973 | 5' | -55.2 | NC_003521.1 | + | 208213 | 1.09 | 0.004899 |
Target: 5'- cUGCAGCAGUCGCAGGUACAGACACCAg -3' miRNA: 3'- -ACGUCGUCAGCGUCCAUGUCUGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 178960 | 0.71 | 0.804358 |
Target: 5'- cGUGGUGGUCGUcauGG-ACAGGCGCCGc -3' miRNA: 3'- aCGUCGUCAGCGu--CCaUGUCUGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 180019 | 0.7 | 0.829983 |
Target: 5'- aGCAGCGGcUCGUAGGagACGGG-ACCGu -3' miRNA: 3'- aCGUCGUC-AGCGUCCa-UGUCUgUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 167661 | 0.66 | 0.967595 |
Target: 5'- cGC-GCcaGGUCGCAGGccgagGCGG-CGCCGc -3' miRNA: 3'- aCGuCG--UCAGCGUCCa----UGUCuGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 197983 | 0.74 | 0.58959 |
Target: 5'- uUGCGGUAGUCGCGgucGGUGCAGAaaacgaagagauUGCCGu -3' miRNA: 3'- -ACGUCGUCAGCGU---CCAUGUCU------------GUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 163364 | 0.74 | 0.640109 |
Target: 5'- aGCGGCGG-CgGCAGuGUcACGGGCACCAa -3' miRNA: 3'- aCGUCGUCaG-CGUC-CA-UGUCUGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 123606 | 0.73 | 0.700428 |
Target: 5'- cGCGGCcGUCaGCGGGUGC-GACAUCu -3' miRNA: 3'- aCGUCGuCAG-CGUCCAUGuCUGUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 190994 | 0.72 | 0.710334 |
Target: 5'- gGCAGCAGgCGCAGGUGgacgUGGGCAgCCu -3' miRNA: 3'- aCGUCGUCaGCGUCCAU----GUCUGU-GGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 76415 | 0.72 | 0.729943 |
Target: 5'- aGCGGCGGUgUGguGGUGCuGGCgACCGu -3' miRNA: 3'- aCGUCGUCA-GCguCCAUGuCUG-UGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 168744 | 0.71 | 0.804358 |
Target: 5'- cGCcgacGCGGUUGCGGGU-CGGACGCg- -3' miRNA: 3'- aCGu---CGUCAGCGUCCAuGUCUGUGgu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 7759 | 0.71 | 0.758714 |
Target: 5'- gGCGGCAGUCcCA---GCAGACGCCGc -3' miRNA: 3'- aCGUCGUCAGcGUccaUGUCUGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 44078 | 0.72 | 0.720175 |
Target: 5'- gGCAGCAGac---GGUGCAGGCGCCGc -3' miRNA: 3'- aCGUCGUCagcguCCAUGUCUGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 16983 | 0.85 | 0.165187 |
Target: 5'- aGCAGCAGcCGCAGGgacaGCAGGCGCCc -3' miRNA: 3'- aCGUCGUCaGCGUCCa---UGUCUGUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 39213 | 0.71 | 0.777362 |
Target: 5'- cGCAGCAG-CGCGGGcucggggacaGCGGugGCCc -3' miRNA: 3'- aCGUCGUCaGCGUCCa---------UGUCugUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 183132 | 0.81 | 0.288207 |
Target: 5'- uUGCGGCGGUCGCAuccccGUGCAGAC-CCAg -3' miRNA: 3'- -ACGUCGUCAGCGUc----CAUGUCUGuGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 15346 | 0.72 | 0.719194 |
Target: 5'- gUGCAGCAGUCGCGacuGGUGacguacuCGGAC-CCu -3' miRNA: 3'- -ACGUCGUCAGCGU---CCAU-------GUCUGuGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 111874 | 0.71 | 0.795501 |
Target: 5'- gUGguGCAGaCGCuGGUGgAGaACGCCAc -3' miRNA: 3'- -ACguCGUCaGCGuCCAUgUC-UGUGGU- -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 107336 | 0.7 | 0.824978 |
Target: 5'- cGCAGCAGcggCGcCAGGUgauccucgaccucggGCGGACACa- -3' miRNA: 3'- aCGUCGUCa--GC-GUCCA---------------UGUCUGUGgu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 102772 | 0.76 | 0.520288 |
Target: 5'- cGCGGCGGUCGCGGGcgACccACGCCc -3' miRNA: 3'- aCGUCGUCAGCGUCCa-UGucUGUGGu -5' |
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13973 | 5' | -55.2 | NC_003521.1 | + | 40234 | 0.73 | 0.650225 |
Target: 5'- gGCAGCGGUCGCAGGcgccgccuccgGCAGcucACGCUu -3' miRNA: 3'- aCGUCGUCAGCGUCCa----------UGUC---UGUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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