miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 5' -55.2 NC_003521.1 + 208213 1.09 0.004899
Target:  5'- cUGCAGCAGUCGCAGGUACAGACACCAg -3'
miRNA:   3'- -ACGUCGUCAGCGUCCAUGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 16983 0.85 0.165187
Target:  5'- aGCAGCAGcCGCAGGgacaGCAGGCGCCc -3'
miRNA:   3'- aCGUCGUCaGCGUCCa---UGUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 183132 0.81 0.288207
Target:  5'- uUGCGGCGGUCGCAuccccGUGCAGAC-CCAg -3'
miRNA:   3'- -ACGUCGUCAGCGUc----CAUGUCUGuGGU- -5'
13973 5' -55.2 NC_003521.1 + 215439 0.78 0.410217
Target:  5'- aGCAG-AGcCGCGGGUGCuGGCGCCAg -3'
miRNA:   3'- aCGUCgUCaGCGUCCAUGuCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 128329 0.76 0.48212
Target:  5'- aGCcGCGGUCcucggGCAGGUACAGGC-CCAc -3'
miRNA:   3'- aCGuCGUCAG-----CGUCCAUGUCUGuGGU- -5'
13973 5' -55.2 NC_003521.1 + 75769 0.76 0.510629
Target:  5'- gGCAGaaaGGcCGCcuccAGGUGCAGACGCCGc -3'
miRNA:   3'- aCGUCg--UCaGCG----UCCAUGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 102772 0.76 0.520288
Target:  5'- cGCGGCGGUCGCGGGcgACccACGCCc -3'
miRNA:   3'- aCGUCGUCAGCGUCCa-UGucUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 69404 0.75 0.569545
Target:  5'- cGCAGCAGaCGCGGG-ACGGugacggcgcGCACCAc -3'
miRNA:   3'- aCGUCGUCaGCGUCCaUGUC---------UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 197983 0.74 0.58959
Target:  5'- uUGCGGUAGUCGCGgucGGUGCAGAaaacgaagagauUGCCGu -3'
miRNA:   3'- -ACGUCGUCAGCGU---CCAUGUCU------------GUGGU- -5'
13973 5' -55.2 NC_003521.1 + 232354 0.74 0.599661
Target:  5'- aGCAGCAGUCGCGGc----GGCACCGc -3'
miRNA:   3'- aCGUCGUCAGCGUCcauguCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 123184 0.74 0.599661
Target:  5'- cGCGgcGCAGUCGCAGGcggaAC-GACACCGg -3'
miRNA:   3'- aCGU--CGUCAGCGUCCa---UGuCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 69441 0.74 0.599661
Target:  5'- cGguGgAGUCGCAGGUGCgcgAGGCGCa- -3'
miRNA:   3'- aCguCgUCAGCGUCCAUG---UCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 166865 0.74 0.606726
Target:  5'- cGCGGCGGgCGCAGGUcguacaucaaguccGCGGGCGCgCGg -3'
miRNA:   3'- aCGUCGUCaGCGUCCA--------------UGUCUGUG-GU- -5'
13973 5' -55.2 NC_003521.1 + 216616 0.74 0.609756
Target:  5'- aGCAGCAGUCgacgguagGCGGGcGCGccGACGCCGg -3'
miRNA:   3'- aCGUCGUCAG--------CGUCCaUGU--CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 234133 0.74 0.609756
Target:  5'- aGCAGCGcUCGCGGGcGCAGGC-CCu -3'
miRNA:   3'- aCGUCGUcAGCGUCCaUGUCUGuGGu -5'
13973 5' -55.2 NC_003521.1 + 223969 0.74 0.619867
Target:  5'- aUGUAGCGGUCGUu-GU-CAGGCACCAc -3'
miRNA:   3'- -ACGUCGUCAGCGucCAuGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 101776 0.74 0.640109
Target:  5'- gUGCAGCAGguugCGCAGGUcaguUGGGCGCgCAc -3'
miRNA:   3'- -ACGUCGUCa---GCGUCCAu---GUCUGUG-GU- -5'
13973 5' -55.2 NC_003521.1 + 163364 0.74 0.640109
Target:  5'- aGCGGCGG-CgGCAGuGUcACGGGCACCAa -3'
miRNA:   3'- aCGUCGUCaG-CGUC-CA-UGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 240462 0.73 0.650225
Target:  5'- gGCAGCGGUCGCAGGcgccgccuccgGCAGcucACGCUu -3'
miRNA:   3'- aCGUCGUCAGCGUCCa----------UGUC---UGUGGu -5'
13973 5' -55.2 NC_003521.1 + 40234 0.73 0.650225
Target:  5'- gGCAGCGGUCGCAGGcgccgccuccgGCAGcucACGCUu -3'
miRNA:   3'- aCGUCGUCAGCGUCCa----------UGUC---UGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.