miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 5' -55.2 NC_003521.1 + 82655 0.66 0.961064
Target:  5'- cGCAGCAagcuaaCGCAGacuacCAGGCACCAg -3'
miRNA:   3'- aCGUCGUca----GCGUCcau--GUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 228706 0.66 0.961064
Target:  5'- gUGCAGCcgcaGGUCGCAGaucauGUuguCGGGCugCGu -3'
miRNA:   3'- -ACGUCG----UCAGCGUC-----CAu--GUCUGugGU- -5'
13973 5' -55.2 NC_003521.1 + 214573 0.66 0.957478
Target:  5'- aGCAGCAGgggCGagGGGUcCuccuGGCACCGg -3'
miRNA:   3'- aCGUCGUCa--GCg-UCCAuGu---CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 222684 0.66 0.960715
Target:  5'- aGCAGCGGcUCGaccucggugcggcCGGGcgUGCGGAuCACCAg -3'
miRNA:   3'- aCGUCGUC-AGC-------------GUCC--AUGUCU-GUGGU- -5'
13973 5' -55.2 NC_003521.1 + 60012 0.66 0.957478
Target:  5'- cUGCAGCAG-CGCG---ACAG-CACCGg -3'
miRNA:   3'- -ACGUCGUCaGCGUccaUGUCuGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 56971 0.66 0.957478
Target:  5'- aGCGGUAGaugCGCGaGUGCAGGCucuCCu -3'
miRNA:   3'- aCGUCGUCa--GCGUcCAUGUCUGu--GGu -5'
13973 5' -55.2 NC_003521.1 + 123548 0.66 0.961064
Target:  5'- cGU--CAGUUcggGCAGGUGCAG-CGCCAg -3'
miRNA:   3'- aCGucGUCAG---CGUCCAUGUCuGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 180847 0.66 0.957478
Target:  5'- uUGCAcGUAGcCGCGGGUcagGCGGGCGuuGu -3'
miRNA:   3'- -ACGU-CGUCaGCGUCCA---UGUCUGUggU- -5'
13973 5' -55.2 NC_003521.1 + 64220 0.66 0.95636
Target:  5'- cGCAGCAGcgCGaggacgugcucaucCAGGUACAGG-ACCu -3'
miRNA:   3'- aCGUCGUCa-GC--------------GUCCAUGUCUgUGGu -5'
13973 5' -55.2 NC_003521.1 + 142867 0.66 0.952488
Target:  5'- cUGCucAGCAGUCGCAGcagcgGCGaucccuuggagagcGGCGCCAu -3'
miRNA:   3'- -ACG--UCGUCAGCGUCca---UGU--------------CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 168372 0.66 0.964435
Target:  5'- aGCGGCAGUCGgCGGGca-GGAUguagguggcguuGCCGc -3'
miRNA:   3'- aCGUCGUCAGC-GUCCaugUCUG------------UGGU- -5'
13973 5' -55.2 NC_003521.1 + 68140 0.66 0.957478
Target:  5'- aGCAGUgcugguaucAGgCGCAGGUGCuGcgucuGCGCCAg -3'
miRNA:   3'- aCGUCG---------UCaGCGUCCAUGuC-----UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 128162 0.66 0.961064
Target:  5'- cUGCAgGCAGggCGUGGGgucgUGCAG-CACCGg -3'
miRNA:   3'- -ACGU-CGUCa-GCGUCC----AUGUCuGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 218040 0.66 0.961064
Target:  5'- gGCGGCGGcgucCGCAGGUAgAuGAggucCACCGu -3'
miRNA:   3'- aCGUCGUCa---GCGUCCAUgU-CU----GUGGU- -5'
13973 5' -55.2 NC_003521.1 + 174667 0.66 0.961064
Target:  5'- gGCGGCGuucuuagccacGUCauGCAGGUccuuCAGACACUg -3'
miRNA:   3'- aCGUCGU-----------CAG--CGUCCAu---GUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 79212 0.66 0.961064
Target:  5'- cGCAGCAcGUUGCccgAGGgcacCAGAUGCCc -3'
miRNA:   3'- aCGUCGU-CAGCG---UCCau--GUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 17458 0.66 0.957478
Target:  5'- cGCGGCAGcgcUCGgAGGagagACGacGGCACCGg -3'
miRNA:   3'- aCGUCGUC---AGCgUCCa---UGU--CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 218166 0.66 0.953673
Target:  5'- aGCAGCAGguaGUAGGUgACGacGAC-CCAg -3'
miRNA:   3'- aCGUCGUCag-CGUCCA-UGU--CUGuGGU- -5'
13973 5' -55.2 NC_003521.1 + 32129 0.66 0.961064
Target:  5'- --gGGCAGguaGCGGGcGCGGuGCACCAa -3'
miRNA:   3'- acgUCGUCag-CGUCCaUGUC-UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 167661 0.66 0.967595
Target:  5'- cGC-GCcaGGUCGCAGGccgagGCGG-CGCCGc -3'
miRNA:   3'- aCGuCG--UCAGCGUCCa----UGUCuGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.